Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03460 ATGCAACAATCCAACGGTTCTGATTCATCCACGCCAAAGCAACAACCGGAGCCAAACAAACAACGCCAACCGACTCCGCCGCAACAGCCTCATACGGTTGCGGTGCCTCAACCGTGGGTTCCGATGCAGTATCCGACGGCGATGGTAATGCCGCACCACATGATGCCACCTCAGCATTACGCGCCGCCGCCTTATGTGCCTTACCCCCACCACCACCAGTATCAACAACCGCTTCACGTGCCGcatcatcatcagcaccatcaccagcagcatGGATCCAACGGAGAGAATAAGACTCTGTGGATTGGAGATTTGCATAACTGGATGGATGAAAACTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCATAATGGAATTTCAGAGGGTTATGGATTTGTGGAATTCTTTTCGCATGCCACAGCTGATAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCCAATGCTGACCAACATTTCCGTCTGAACTGGGCTACATTTAGCACAGGAGACAAAGGTTCAGATAATGTTACTGATCTTTCAATTTTCGTAGGAGATTTAGCTCCGGATGTTACAGACAGTTTGCTGCATGAAACTTTTGCTACTACATATCCTTCTGTGAAAGCTGCAAAAGTTGTTTATGATGCCAACACTGGCCGTTCAAAGGGCTACGGATTCGTCAGGTTTGGAGATGAAAACGAGAGGTCTCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCTACTCCAAGGAAATCAACTGGCCATCAACAAGGAGGTCAGTCAAATGGCACATCAAGCCAATCTGAAGCTGATAATACTAATACAACTatatttgttggaggactcgaccctaatgttactgatgaagatcttaggcaggcattctcccagtatggtgagatagcctctgttaagataccagttggaaagggctgtggttttgtccaatttgCCAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTGAATGGGACAATGATTGGCAAGCAAACAGTTCGTCTCTCTTGGGGCCGCAATCCAgcaaataaacagTTTAGATTTGACTTCGGGAGCTGGGCTGGTCCATATTTCCCATCCCCTATTTATGATGGTTATGGATATGCAATGCCTTCTCCTCATCATGACCCAAACATGTATCCTTTAGCTTATGGGGGTTACCCCTTTTATGGTGGCCACCAACAACAAGTAAGCTGA 1281 0.4059 MQQSNGSDSSTPKQQPEPNKQRQPTPPQQPHTVAVPQPWVPMQYPTAMVMPHHMMPPQHYAPPPYVPYPHHHQYQQPLHVPHHHQHHHQQHGSNGENKTLWIGDLHNWMDENYLHRCFASTGEISSIKVIRNKHNGISEGYGFVEFFSHATADKVLQNYAGILMPNADQHFRLNWATFSTGDKGSDNVTDLSIFVGDLAPDVTDSLLHETFATTYPSVKAAKVVYDANTGRSKGYGFVRFGDENERSQAMTQMNGVYCSSRPMRIGAATPRKSTGHQQGGQSNGTSSQSEADNTNTTIFVGGLDPNVTDEDLRQAFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRFDFGSWAGPYFPSPIYDGYGYAMPSPHHDPNMYPLAYGGYPFYGGHQQQVS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03460 426 MobiDBLite consensus disorder prediction 1 37 - -
Car04g03460 426 Gene3D - 285 385 IPR012677 -
Car04g03460 426 SUPERFAMILY RNA-binding domain, RBD 61 179 IPR035979 GO:0003676
Car04g03460 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 178 IPR000504 GO:0003723
Car04g03460 426 SUPERFAMILY RNA-binding domain, RBD 286 385 IPR035979 GO:0003676
Car04g03460 426 MobiDBLite consensus disorder prediction 266 299 - -
Car04g03460 426 MobiDBLite consensus disorder prediction 1 18 - -
Car04g03460 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Car04g03460 426 CDD RRM3_NGR1_NAM8_like 295 366 - -
Car04g03460 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 32 425 - -
Car04g03460 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Car04g03460 426 MobiDBLite consensus disorder prediction 271 299 - -
Car04g03460 426 SMART rrm1_1 297 364 IPR000504 GO:0003723
Car04g03460 426 SMART rrm1_1 192 266 IPR000504 GO:0003723
Car04g03460 426 SMART rrm1_1 99 174 IPR000504 GO:0003723
Car04g03460 426 MobiDBLite consensus disorder prediction 19 34 - -
Car04g03460 426 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 32 425 - -
Car04g03460 426 Gene3D - 184 284 IPR012677 -
Car04g03460 426 Gene3D - 65 183 IPR012677 -
Car04g03460 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Car04g03460 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 166 IPR000504 GO:0003723
Car04g03460 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Car04g03460 426 SUPERFAMILY RNA-binding domain, RBD 175 285 IPR035979 GO:0003676
Car04g03460 426 CDD RRM2_SECp43_like 190 269 - -
Car04g03460 426 CDD RRM1_SECp43_like 99 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03460 Car-Chr4 63258244 63262985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03460 65 376 Eukaryotic Initiation Factors Gene Family AT4G34110 27.129 2.09e-31 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03460 04 63258244 63262985 Car04g03460 04 63258244 63262985 ECH
Car04g03460 04 63258244 63262985 Car05g02732 05 72410048 72414426 PCT