Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03426 ATGGCTTTCCTTCAAGACCAGTTTCAACGCCACTACCAAACCCAACAACAACAACCACCACCGCCACAAACCAAATCTTTCAGAAATTTACGAACAATTGATGGTCAGATGTCGCAGCAGATGACTTTTTATAACCCTGCTGATTTGCAAGATCAGTCTCAGCATCCACCTTACATTCCTCCATGTATTGATGGCGGTGTTGATTTGCATTGGAATTTTGGTTTGGAACCAGAGCGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAACAATTCTCAGATATCTTCTGTGGATTTCCTGCAGCCACGATCTGTGTCCACAGGACTGGGCTTGTCGCTTGATAATACTCGCCTGGCTTCAACCGGAGACTCGGCTTTATTGTCACTTATAGGGGATGATATTGGTCGTCAGTTACAACAGGAAGATTTGGAGATGGATAGATTTCTCAAAGTGCAGGGTGAACAGTTGCGGCAAGCAATTTTAGAGAAAGTTCAGGCAACACAACTTCAGAGTATTTCAATCATTGAAGAAAAAGTCCTCCAGAAACTTCGTGAGAAAGAAACGGAGGTGGAGAACATCAACAAGAGGAATATGGAACTTGAAGATCAAATGGAGCAATTGAGCGTAGAAGCGGTCGCATGGCAACAGCGAGCCAGATACAATGAAAACATGATTGCTGCTCTCAAGTTTAACCTTCAGCAAGCATATGTCCAAAGTAGAGATAGTAAAGAAGGATGCGGCGACAGCGAGGTCGATGATACAGCTTCTTGCTGCAATGGCCGCTCGCTTGATTTTCATCTTCTCTCGAAGGAAAATTCCAATACAAAAGACATGATGATATGTAAGGCCTGCAGAGTCAACGAAGTGACGATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTCTGTCCTCTATGTCAATCCTCTAAATTCATCGGCATGGAGGTCTACATGTAA 984 0.4289 MAFLQDQFQRHYQTQQQQPPPPQTKSFRNLRTIDGQMSQQMTFYNPADLQDQSQHPPYIPPCIDGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLASTGDSALLSLIGDDIGRQLQQEDLEMDRFLKVQGEQLRQAILEKVQATQLQSISIIEEKVLQKLREKETEVENINKRNMELEDQMEQLSVEAVAWQQRARYNENMIAALKFNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRSLDFHLLSKENSNTKDMMICKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03426 327 Pfam Zinc finger, C3HC4 type (RING finger) 280 317 - -
Car04g03426 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 325 IPR013083 -
Car04g03426 327 PIRSF SBP1_RNase_bind 2 327 IPR017066 -
Car04g03426 327 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 327 IPR017066 -
Car04g03426 327 ProSiteProfiles Zinc finger RING-type profile. 281 316 IPR001841 -
Car04g03426 327 Coils Coil 176 217 - -
Car04g03426 327 PANTHER F2G19.2 1 327 - -
Car04g03426 327 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03426 Car-Chr4 62958318 62960565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03426 280 317 Miscellaneous Gene Families AT2G21380 47.368 1.27e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03426 04 62958318 62960565 Car04g03426 04 62958318 62960565 ECH