Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03425 ATGGCTTCTTCTCATGATGATTCACAAGATTTCTCCAATTTATTCAACCAATTCATTGATCCAAATCTCAACCACTCCGCTTCTGATTACAACAATCCATCTTCTCCCTCTTTTCATTTCTCTCATCCTTATCCTAATTCTTCCACCATCCCTAATTTCCCCAATTTCActtcttcttcttcttcttctgctCAGAATGCTGAGGCTTCAGAGTTGCCATCTTCAAAGGGGACTTCACCACCACGTTCTTCCTCAAAGAGAGGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAACGAGAAAATGAAAGCTTTGCAGAATTTGATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAAGCCATAGATTATTTAAAGCAGCTTCAGCTTCAAGTACAAATGTTAATGATGAGAAATGGTTTTAGCTTGCATCCAATGTCTTTATCAGGAGGGCCGCGACCTATGATGTTTTCTCCGACCGAGTTGAATCTTGATGAAGGTAATGGATTTCCCAATTCTATCACTGCAGTCGCCTCATCTGCGAACGATGAATGTTTAGCGCGGCCTGCTTTTACTTTTCCAGAACAATGCAGCATCTCAAATCAATCCGTTATACCCCCGATGACAAATTTAGCTACTTTTGATACCTCGCCAAGTTTTCAACCCTCTATGAAGGATGCAGTCTATAACAGCATGCCACAACTGATTTTGGATACAACAAGAATTGGAAAAACTCCTTCTCCAGATGTGTCTTAA 786 0.3919 MASSHDDSQDFSNLFNQFIDPNLNHSASDYNNPSSPSFHFSHPYPNSSTIPNFPNFTSSSSSSAQNAEASELPSSKGTSPPRSSSKRGRAAEFHNLSEKRRRSKINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLMMRNGFSLHPMSLSGGPRPMMFSPTELNLDEGNGFPNSITAVASSANDECLARPAFTFPEQCSISNQSVIPPMTNLATFDTSPSFQPSMKDAVYNSMPQLILDTTRIGKTPSPDVS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03425 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 149 IPR036638 GO:0046983
Car04g03425 261 MobiDBLite consensus disorder prediction 22 85 - -
Car04g03425 261 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 237 IPR031066 -
Car04g03425 261 CDD bHLH_AtPIF_like 89 151 - -
Car04g03425 261 Gene3D - 84 148 IPR036638 GO:0046983
Car04g03425 261 Pfam Helix-loop-helix DNA-binding domain 93 139 IPR011598 GO:0046983
Car04g03425 261 MobiDBLite consensus disorder prediction 22 100 - -
Car04g03425 261 PANTHER TRANSCRIPTION FACTOR SPATULA 13 237 - -
Car04g03425 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 138 IPR011598 GO:0046983
Car04g03425 261 SMART finulus 95 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03425 Car-Chr4 62954434 62956620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03425 89 160 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 86.111 1.22e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g03425 HLH 3.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03425 04 62954434 62956620 Car04g03425 04 62954434 62956620 ECH