Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03424 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTCGACTGAAACCTTTGAATTTGATTGTGGAACTACATCAAGTACTGCTGCAGTTGATCAGCACATTTTCTGGAATAACATGCGGACTCCTGCCGACAATCGATTACCCGAATTTATACTTTCCCCCGGTGATATAAACCCATCTCAAGGGAACTCTGTAAACCATACATGGCAGAATTTGAGCGGATGGAGCTTAGGTGAGCCAAGTTCCAGCAATACACAAAATGATGTTAACAACAACGAGCTGAAAAGGGAGCTAGGGTTATCACCTCCGGTAAATGCTGGCGCTATAGCTGGTTCAAGACTAGAAGAAAGACACTTTGAACCAACCAACGCATTTTCACTGGACAATCTCAATTCAGGTCCTATGTATATGTGTAACTCCAATGCTCATTTGGTGCCACAAAATCTCAACTTAAATGCTGCTTTAGTAGATAATGGCAGTGATAATAGCTATCGTGTGGAAGTTGAACATCCTAACATGACCAAGTCTAGCGGTCCAATAAATGAACATATGCCACCTCCTATTAGTTCTGGTTCTTTTTTGCTTCCTTCTGGAAGTAACACCATTTTTGTCGAGGATACCGACGGTAGGCCGGGTTGTTCTCTAGACTCTCGCCGTGTATCTTGTAAAAGAAAGGCGATTGAACAGAACGCTGGACAATCTTCGGATGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGCAGTGCTTGGAATGCTCTTCCTACTACTCAAGATTATGCAGGGAGCAATTTTAACAGATCTGCATTGGCAGAACAGGTGAATGCAAGACTTGGCCTGAGTGTCGGGGACGGATCATCTGGAAGCATACCCGAGTCAACTGTTGCAGGAAGCTCAGAAAGCTTCCACCGAAATTTTCGTTTGAGGATAAACCCTTCAAGCCAACCAATTTCTCTTCCTCCCCCCTCATTCTCAAGTGGGAGTGTGATCAGAAATCCTAGTGTTCCTTCGTCTTCTCCAATATTGCAAAGGTTTCACCCCATCGACAATTCTCTTGACTTGAGGTCGGTACCACCGGTTGATGCCATGCTTCCTCAAAGCCAGCCCCTTTTAATTCATGTTCCCGCTTTACCAAGGAGCGCACAATCGGTTAGGTGGAGCGGTGGTTCTAGCTCGGCAAACAACCATTCCTCAAACTCAGTTATATGTGTAGATAGGGATAATCAACCGCATGAGGGAGCAAGCACAAGAAGTATGCCTAGAAACATTTTAGAACACCCGGTTTTCGTACCTGCAACAAATGTAAGAAATGTGGCTCGAAATCCAACTAGACCTTCCGGTAATGCAAATTTAAGTATTCCAGGAAATGTTGCTTCATCATCACGGACTGGACCAAATCCAGCTATGAATCCGTCGTCTGTCTCGGCGTGGGTTTCCCGTCCTAATCCTCAGCAGTATCCGCGCAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGAAGCCGGAAGTTCAAGCAATAACTATTCTACCTTGCGCGGTGCGTCTACTTCTTCTGAATCAAGAGGACCGCCATCTGGGGTGAACCCAGGATCATCTTCATGGTTGGAGAGGTCAGCTGATAGTGAATTTGGAATTCCCTATTCGTTAAGATCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGGTTTGAGGATGTTATGATTCTTGACCATTCAATGTTTTCTACCATTGCTGATATGCATGATCGACACAGGGATATGCGGCTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTCGAAGAACGCATCGGAAATGTGAGTACAGGATTGAATGAAGAGACCATTATGAAACATTTGAAACAGAAGAAATATTCAGCTGAATCAGATTTTCAGAATGAAGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAAACAACGATGATATCGGATTGTTGGATTGCGGACACGATTACCATACCGACTGTATTAAACAGTGGCTAATGCATAAGAATCTCTGTCCAATTTGTAAGACAACAGGCTTGGCAACATGA 2124 0.4477 MQGQRGTIGSSTETFEFDCGTTSSTAAVDQHIFWNNMRTPADNRLPEFILSPGDINPSQGNSVNHTWQNLSGWSLGEPSSSNTQNDVNNNELKRELGLSPPVNAGAIAGSRLEERHFEPTNAFSLDNLNSGPMYMCNSNAHLVPQNLNLNAALVDNGSDNSYRVEVEHPNMTKSSGPINEHMPPPISSGSFLLPSGSNTIFVEDTDGRPGCSLDSRRVSCKRKAIEQNAGQSSDGGSSSYSQHTDGSAWNALPTTQDYAGSNFNRSALAEQVNARLGLSVGDGSSGSIPESTVAGSSESFHRNFRLRINPSSQPISLPPPSFSSGSVIRNPSVPSSSPILQRFHPIDNSLDLRSVPPVDAMLPQSQPLLIHVPALPRSAQSVRWSGGSSSANNHSSNSVICVDRDNQPHEGASTRSMPRNILEHPVFVPATNVRNVARNPTRPSGNANLSIPGNVASSSRTGPNPAMNPSSVSAWVSRPNPQQYPRRLSEYVRRSLFSPGSEAGSSSNNYSTLRGASTSSESRGPPSGVNPGSSSWLERSADSEFGIPYSLRSLAVAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSMFSTIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKQKKYSAESDFQNEAEPCCVCQEEYKNNDDIGLLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03424 707 MobiDBLite consensus disorder prediction 56 87 - -
Car04g03424 707 MobiDBLite consensus disorder prediction 432 481 - -
Car04g03424 707 CDD RING-H2_TTC3 659 701 - -
Car04g03424 707 MobiDBLite consensus disorder prediction 225 253 - -
Car04g03424 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 704 IPR013083 -
Car04g03424 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Car04g03424 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Car04g03424 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Car04g03424 707 MobiDBLite consensus disorder prediction 381 419 - -
Car04g03424 707 MobiDBLite consensus disorder prediction 499 536 - -
Car04g03424 707 Pfam Ring finger domain 660 701 IPR001841 -
Car04g03424 707 MobiDBLite consensus disorder prediction 434 481 - -
Car04g03424 707 MobiDBLite consensus disorder prediction 497 536 - -
Car04g03424 707 SMART ring_2 660 700 IPR001841 -
Car04g03424 707 MobiDBLite consensus disorder prediction 381 403 - -
Car04g03424 707 SUPERFAMILY RING/U-box 650 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03424 Car-Chr4 62944611 62950726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03424 1 707 C3H Transcription Factor Family AT2G15530 32.620 1.48e-73 250
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03424 04 62944611 62950726 Car06g01743 06 17263383 17268059 ECH
Car04g03424 04 62944611 62950726 Car08g00484 08 4069448 4072684 ECH
Car04g03424 04 62944611 62950726 Car04g03424 04 62944611 62950726 ECH