Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03420 atgataggtatagtaggtagggaatatagtagtaGTTCgatgaattcaagaagcaataacaataaggagatgaagatgaagatgaaagaaaaaaaagatATGAAACCATATAGAGGAATAAGGATGAGAAAGTGGGGTAAATGGGTGGCTGAGATTAGAGAACCAAACAAAAGATCAAGAATTTGGTTAGGTTCATACATAACACCTATTGCCGCCGCACGTGCGTATGACACGGCCGTTTTCTACCTTAGAGGTCCTTCAGCACACCTTAATTTTCCCGAATTGTTGTTGAAAGATCAAGAAGAAGAAAAAAACGAACAAGGTTGTTGTTCTATCAAACAACATGATAATATGTCGGCTGATTCAATTAGGAAAAAGGCTACTCAAGTTGGTGCTAGAGTTGATGCTCTTCAAATTTCTCTTCATCATCACTCTTCTTTCAATTCACTCAAACCTGATTTGAATGAGTTTCCAAAACCCGAAGATTATTGA 492 0.311 MIGIVGREYSSSSMNSRSNNNKEMKMKMKEKKDMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSAHLNFPELLLKDQEEEKNEQGCCSIKQHDNMSADSIRKKATQVGARVDALQISLHHHSSFNSLKPDLNEFPKPEDY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03420 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 162 - -
Car04g03420 163 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Car04g03420 163 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Car04g03420 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 162 - -
Car04g03420 163 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Car04g03420 163 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Car04g03420 163 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Car04g03420 163 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Car04g03420 163 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Car04g03420 163 MobiDBLite consensus disorder prediction 1 33 - -
Car04g03420 163 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03420 Car-Chr4 62895652 62896667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03420 31 162 AP2-EREBP Transcription Factor Family AT2G23340 56.000 2.32e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car04g03420 AP2 3.7e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03420 04 62895652 62896667 Car04g03420 04 62895652 62896667 ECH