Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03413 ATGGCTTCCACAACTCTCTCCCACGCCATGAATCTTACGATCCTCCTCGTGTTACTTACCTTCACAGTTTCACTAGCCTTAGACATGTCGATAATCTCGTACGACAAAACTCACACCGATAAATCAAGCCACAGAACCGAAAAGGAAGTGTTGACCTTGTACGAGGAGTGGTTAGTTAAGCACGGTAAAGTTTACAACGGTTTAGGTGAGAAAGACAAGAGGTTTGACATCTTCAAAGACAACCTTAAGTTCATCGATGAACATAATGTTCTGAATTCAACCTATAGGTTGGGTCTGACCCGGTTCGCTGATCTAACCAATGAAGAGTATCGAGCCAAGTTTTTGGGAACTAGGGTCGATCCGAACCGGAAGATCCGTAAGGTGAATTCACCGAGCAATAGATATGCGCCACGTGTCGGCGATAAGTTACCCGAGTCCGTTGATTGGAGAAAGGAAGGTGCTGTTGCTGCAGTCAAAGACCAAGGAAGTTGCGGGAGTTGTTGGGCATTCTCAGCAATTGCTGCCGTGGAAGGAATAAATAAGATAGTGACAGGAGATTTGATTTCACTATCAGAACAAGAGCTGGTGGACTGTGATACATCATACAATGAAGGATGCAATGGTGGCCTTATGGACTACGCCTTTGATTTCATCATTGATAATGGTGGCATTGACTCTGATGAGGATTATCCCTACCTTGCTGTTGATGGTAGATGTGACCAATACAGGAAAAATGCTAAAGTTGTTTCAATTGATGATTATGAAGATGTTCCTGGCTATGATGAATTGGCCTTGCAAAAGGCTGTTGCAAATCAGCCCATCAGTGTTGCTATTGAAGGAGGCGGTAGGGAATTTCAGTTATACGAATATGGTGTGTTTACAGGAAGATGTGGAACAGCATTAGACCATGGTGTTGCAGCTGTAGGATACGGTACTGAAAACGGTAAAGATTATTGGATTGTGAGGAACTCATGGGGTTCTAGCTGGGGAGAAGCCGGCTACATCCGCCTCGAACGTAATCTAGCTTCAAGCAGATCAGGCAAATGTGGAATCGCGATCGAGCCATCTTATCCAATTAAGAATGGACAGAATCCTCCTAACCCTGGACCATCACCTCCTTCACCTGTGAAGCCACCATCTGTCTGTGACAGTTACTATAGCTGTGCTGAAGGAACCACTTGTTGCTGTATTTATGAGTATGGAAGGTCCTGCTTTGAATGGGGATGTTGTCCTCTTGAGTCCGCTACTTGTTGTGAAGATCATTACAGTTGCTGCCCTCATGAGTATCCAGTTTGTGACATTTATCAAGGACTTTGTCTTAAGGGCAAGAACAACCCATTAGGAGTGAAGGCATTCAAACGAACTCCTGCAAAGCGTCACTTTGCCTTTGGAGGTAAGAACAAGATCAGCAGTGCTTAA 1419 0.4454 MASTTLSHAMNLTILLVLLTFTVSLALDMSIISYDKTHTDKSSHRTEKEVLTLYEEWLVKHGKVYNGLGEKDKRFDIFKDNLKFIDEHNVLNSTYRLGLTRFADLTNEEYRAKFLGTRVDPNRKIRKVNSPSNRYAPRVGDKLPESVDWRKEGAVAAVKDQGSCGSCWAFSAIAAVEGINKIVTGDLISLSEQELVDCDTSYNEGCNGGLMDYAFDFIIDNGGIDSDEDYPYLAVDGRCDQYRKNAKVVSIDDYEDVPGYDELALQKAVANQPISVAIEGGGREFQLYEYGVFTGRCGTALDHGVAAVGYGTENGKDYWIVRNSWGSSWGEAGYIRLERNLASSRSGKCGIAIEPSYPIKNGQNPPNPGPSPPSPVKPPSVCDSYYSCAEGTTCCCIYEYGRSCFEWGCCPLESATCCEDHYSCCPHEYPVCDIYQGLCLKGKNNPLGVKAFKRTPAKRHFAFGGKNKISSA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03413 472 Gene3D Cysteine proteinases 27 361 - -
Car04g03413 472 PANTHER CYSTEINE PROTEASE 34 388 - -
Car04g03413 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 161 172 IPR000169 -
Car04g03413 472 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
Car04g03413 472 SMART GRAN_2 382 439 IPR000118 -
Car04g03413 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 318 337 IPR025661 -
Car04g03413 472 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 388 - -
Car04g03413 472 Pfam Granulin 393 440 IPR000118 -
Car04g03413 472 SUPERFAMILY Cysteine proteinases 45 359 IPR038765 -
Car04g03413 472 SMART Inhibitor_I29_2 54 110 IPR013201 -
Car04g03413 472 PRINTS Papain cysteine protease (C1) family signature 161 176 IPR000668 GO:0006508|GO:0008234
Car04g03413 472 PRINTS Papain cysteine protease (C1) family signature 303 313 IPR000668 GO:0006508|GO:0008234
Car04g03413 472 PRINTS Papain cysteine protease (C1) family signature 318 324 IPR000668 GO:0006508|GO:0008234
Car04g03413 472 Pfam Papain family cysteine protease 143 359 IPR000668 GO:0006508|GO:0008234
Car04g03413 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 301 311 IPR025660 -
Car04g03413 472 SUPERFAMILY Granulin repeat 379 413 - -
Car04g03413 472 CDD Peptidase_C1A 144 358 IPR039417 -
Car04g03413 472 SMART pept_c1 143 359 IPR000668 GO:0006508|GO:0008234
Car04g03413 472 Gene3D Granulin 379 442 IPR037277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03413 Car-Chr4 62780254 62784555 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03413 04 62780254 62784555 Car07g01417 07 13352866 13356338 ECH
Car04g03413 04 62780254 62784555 Car04g01475 04 14974750 14977364 ECH
Car04g03413 04 62780254 62784555 Car04g03413 04 62780254 62784555 ECH