Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03391 ATGGCTCTAGAAGCTCTTAACTCACCCACAACCACTACCCCAAAATTCACATTCAATGAACCAACTCTTCGTTACCCTGAAGAACCATGGACAAAACGAAAGCGTTCAAAGCGTTCATCACGTTCATGCACCGAAGAAGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCGGCAACACAAACCGCCACGATTTTTACTCATTACCGGCAACCGGTTCCTCCGGTGACACAACCAAACTCAGTTACAAATGTTCCGTTTGTAACAAAGAGTTTCCTTCTTATCAAGCACTTGGTGGACACAAAGCAAGTCACCGGAAACACACCACCGTCGGCGACGACCAATCAACTTCGTCGGCAGCCACCACTAGCTCCGCTAACACTGCCGTGGGAAGCGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAGTCGTTTCCGACGGGACAGGCTCTGGGTGGACACAAACGTTGTCACTACGAAGGCGGTCATGGTGCGGCTGTAACTGTTTCTGAAGGTGTGGGATCCACACATACTGTCAGTCATCGTGATTTCGATCTCAACATCCCGGCTTTTCCGGAGGTTTTTAATAAGGTCGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGGTGATGATGAAGAAGCCTCGTGTTTCTGTTTTACCCAAGATTGAAATTCCTCATCATCTTCAATGA 699 0.485 MALEALNSPTTTTPKFTFNEPTLRYPEEPWTKRKRSKRSSRSCTEEEYLALCLIMLARGNTNRHDFYSLPATGSSGDTTKLSYKCSVCNKEFPSYQALGGHKASHRKHTTVGDDQSTSSAATTSSANTAVGSGGVRSHECSICHKSFPTGQALGGHKRCHYEGGHGAAVTVSEGVGSTHTVSHRDFDLNIPAFPEVFNKVGEDEVESPHPVVMMKKPRVSVLPKIEIPHHLQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03391 232 Pfam C2H2-type zinc finger 138 161 - -
Car04g03391 232 Pfam C2H2-type zinc finger 83 107 - -
Car04g03391 232 SUPERFAMILY beta-beta-alpha zinc fingers 83 160 IPR036236 -
Car04g03391 232 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 221 IPR044653 GO:0003700
Car04g03391 232 MobiDBLite consensus disorder prediction 113 130 - -
Car04g03391 232 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Car04g03391 232 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Car04g03391 232 MobiDBLite consensus disorder prediction 1 19 - -
Car04g03391 232 SMART c2h2final6 83 105 IPR013087 -
Car04g03391 232 SMART c2h2final6 138 160 IPR013087 -
Car04g03391 232 PANTHER ZINC FINGER PROTEIN ZAT10 1 221 - -
Car04g03391 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 160 IPR013087 -
Car04g03391 232 Gene3D Classic Zinc Finger 81 160 - -
Car04g03391 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Car04g03391 232 MobiDBLite consensus disorder prediction 100 130 - -
Car04g03391 232 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03391 Car-Chr4 62470336 62472048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03391 1 227 C2H2 Transcription Factor Family AT1G27730 51.852 2.61e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g03391 zf-C2H2_6 2.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03391 04 62470336 62472048 Car04g01423 04 14488323 14489714 ECH
Car04g03391 04 62470336 62472048 Car04g03391 04 62470336 62472048 ECH
Car04g03391 04 62470336 62472048 Car05g02787 05 72935950 72937073 PCT