Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03390 ATGGATTCTTTAGGAGCTTCTTTCCTTGATGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAATGAGGATCATGAATATTACTCATCACAATTTCTTAGCCAAAATTCACTTTTGCAAGAAGAAAATGATGGATTGAACAATGAAACACAATCCACATTTTCCTCTATTGAAGCTTGTGAAAATGAGCCTATGATTTATTCTTTTGATCATGATCATATTTCAAACTCACAATATATTTCTCAAGAGAATAGTTATGGTAGCAAGTGTAGTGACATTGATAATACAAACTACTATTTTAGTTATGATGGTAATGTATTAGCAAATAATATTAATACTTTTATATCATCCATGGATTTTTGCGCGGATGATAAATTTTTTGCTTCTTCTATCACACCCTTTAATGAGATTGTTATGGAAGAGAGTGTTAACATGAATGAAGATGCTGCAAGTGATGATAGATTGGAGAAAAATGATTATAGTACTCAAATTATGCAACTCAAAAGGAAACTTGATGTGATAGACGTGGAGGTTCCTATTGAAGAAAAAATTATAAACAACAAAGCAGACAATCAGAAGAAAAAACCTCGTGTTTCAAAAGATGGGTGCATGAAAAATGCAAGGTGTAAAAAGAACCAAAAACTTGGTAGCAATGAAGAGGAGAGAGAAGAGAGTAATAGAGGATCAATTAATGGACATAGCTCTAGTAGTAACATTTCAGATGAGGATAATGTTTCTCAAGAAAATAGTGGAGGAACTACTTCAGGATCTAAATCTGCTCTCAATTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGCCTATATGCAAGGAAAAGAAGAGAGAGGATAAATGAGCGACTAAGAATCCTACAAAATCTTGTACCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTACGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTCAATAATCTCAAGAGTTCTCTACCACTATGA 1083 0.3407 MDSLGASFLDGEWDFFRKMFANEDHEYYSSQFLSQNSLLQEENDGLNNETQSTFSSIEACENEPMIYSFDHDHISNSQYISQENSYGSKCSDIDNTNYYFSYDGNVLANNINTFISSMDFCADDKFFASSITPFNEIVMEESVNMNEDAASDDRLEKNDYSTQIMQLKRKLDVIDVEVPIEEKIINNKADNQKKKPRVSKDGCMKNARCKKNQKLGSNEEEREESNRGSINGHSSSSNISDEDNVSQENSGGTTSGSKSALNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDMWMYAPLAYNGLDIGLNLNNLKSSLPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03390 360 MobiDBLite consensus disorder prediction 229 277 - -
Car04g03390 360 CDD bHLH_AtIND_like 274 336 - -
Car04g03390 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Car04g03390 360 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 357 - -
Car04g03390 360 MobiDBLite consensus disorder prediction 188 228 - -
Car04g03390 360 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 357 - -
Car04g03390 360 Pfam Helix-loop-helix DNA-binding domain 283 323 IPR011598 GO:0046983
Car04g03390 360 SMART finulus 279 328 IPR011598 GO:0046983
Car04g03390 360 MobiDBLite consensus disorder prediction 188 285 - -
Car04g03390 360 Gene3D - 275 331 IPR036638 GO:0046983
Car04g03390 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 338 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03390 Car-Chr4 62442686 62444562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g03390 241 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 78.947 6.28e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g03390 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03390 04 62442686 62444562 Car04g03390 04 62442686 62444562 ECH