Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g03379 ATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTAACAAAACAGTTTATCTTGTTGATAAGCTAACTGCTGATAATAGAGTGTTCCACAAAGCTTGTTTCAGATGCCACCATTGCAAAGGAACCCTCAAGCTAAGCAACTACAACTCTTTTGAGGGAGTTCTTTATTGCAAGCCACATTTTGACCAACTGTTTAAAAGAACTGGAAGCCTTGAAAAAAGCTTTGAAGGGACACCAAAAATTGCCAAACCAGAAAGAAATAATGATAATGAGAAACCTGCAGCAGTTAAAGCTTCAAGTATGTTTGGTGGAACTAGGGACAAATGTTCTGGTTGTCAGAAAACAGTTTATCCAACAGAGAAGGTTACTGTGAATGGAACTCCATACCATAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATTAGTCCTTCTAATTACATAGCACATGAGGGAAAACTCTACTGCAAACACCACCATATCCAACTGATTAAGGAAAAGGGAAATTTAAGCCAACTAGAAGGTGACCATGAGAAAAATGCAATGCATGGGAAAATCAGCGGAGAAGAAGTTGTGGCTTAA 588 0.3895 MAFAGTTQKCMACNKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERNNDNEKPAAVKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKNAMHGKISGEEVVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g03379 195 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 183 - -
Car04g03379 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Car04g03379 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Car04g03379 195 Gene3D Cysteine Rich Protein 4 74 - -
Car04g03379 195 Gene3D Cysteine Rich Protein 105 174 - -
Car04g03379 195 SMART lim_4 9 61 IPR001781 -
Car04g03379 195 SMART lim_4 109 161 IPR001781 -
Car04g03379 195 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Car04g03379 195 Pfam LIM domain 10 64 IPR001781 -
Car04g03379 195 Pfam LIM domain 110 164 IPR001781 -
Car04g03379 195 MobiDBLite consensus disorder prediction 79 93 - -
Car04g03379 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Car04g03379 195 CDD LIM2_SF3 110 170 - -
Car04g03379 195 MobiDBLite consensus disorder prediction 77 103 - -
Car04g03379 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Car04g03379 195 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Car04g03379 195 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Car04g03379 195 CDD LIM1_SF3 6 68 - -
Car04g03379 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g03379 Car-Chr4 62332279 62334373 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car04g03379 LIM 2.2e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g03379 04 62332279 62334373 Car04g03379 04 62332279 62334373 ECH
Car04g03379 04 62332279 62334373 Car05g02799 05 73034069 73036174 PCT