Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02885 ATGGAAAATCTTCCACAAGGTTACCGTCCCAACGTTGGTGTCTGTCTCATCAACCGTGATGATCAGATATTTGTGGCTTCTAGATTGAATGTTCCAGGAGCATGGCAAATGCCACAGGGCGGTATTGAAGATGGCGAAGAGCCCAAATCTGCTGCCATTAGAGAACTTCGAGAAGAAACTGGAATAGTATCTGCCGAGATAATCGCTGAGGTTGATAAATGGTTGACATATGACTTCCCTCCTGCTGTGAAGGCAAAAGTCAATCGTCTCTGGGGAGGTGAATGGCATGGACAGGCACAGAAATGGTTTCTAATGAGATTAACGAAAGACGACGGTGAAATCAACTTAGCTACTGGTGAAGCAGACCCAGAATTTGCAGAGTGGAAATGGACAAGTCCTGAAGAAGTTATTGAGCAGGCAGTGGACTACAAGAGACCAACCTATGAAGAAGTTATAAGAACCTTCAAGCCTTACTTTCAAGGAAATTCAATATCTGCAAAGTGCAAATCGACAAAGTGCCTCTTAACAGGTTCATCAAAATGGCATTATGTTTGTGGAATTTCACTTGTCATATGCTGCTTTTATGATGTTGAACTTACAAAACTTATATTACTTAAGAATAATATTCTTGATGACACTGCTGCAAAGTACCTGTATTTTAATTATATATTTACCTGTGTACATTTGAGGTGTGATGTCCGAGATTCAATTGAGAATTTGGACGTGCTTGTCATAAAGAAATTTCTCTTAAATTTTCCCATTTCTAAAATCATACCATCCTCCGACCAATCAGCTCTCTCTGATTCTCTCACCGTCCGATCGTCACCATCACCTTCCTCCGCCACCTCCGACACTCTTCGTCGCAGCACTTTCCACGCCAACAACAACATTGCAATGTGTCTATGTTGCAAGCAACTGAGAACTGTTATAGTCTTTCAAGGGAATACAAACCTTTTCAACACAAAAATGAGGTGTTGTAATTTTCTCCCTTTTAAATTTTCGAAAATGTGTTACCGGGTGAAACCTAAATTTACAGATAAGAAGTTTGTAGAAATAGACCAACATGGTGTAAAGAGCGCGGTGAAGTTGCGTAAGAAGGTATTTGCTCTTATGGATTATAACATCCCTGACCTAATTGAAAATGGAAGTGGTGAAATGAAATCTAAAATGAATCTGGAAGATTCAGTAGATGATTTTGACATCTCCTTGATTCAAAAGAGATTTCCATCAATTACTTTGGGCAGTGCTCCTCAAGTGGATTTGTATGATGGGACCACATCAAACTCTGAAGCAACAATCATCTCAGCAACCGAAGGTTTTGAACAGAATTTTTATGATTCTTCAGAGGCAAGGCAGGTGCAAAATACTCTTTCTGAAGCATCGTGGCCTTTTGATCGTTCCAGTGTAACATTTTCGGCATCAAGAAAAGATGATTCTTTTCCTTTGACATCTCAATCAGAAGAAACATTGGATGAAGTTACTCGGGAGGATTCTCAAAATAAAGTAGGACTGCAGTCACAATCAAACCTTACACTTAATGAGTTATCTCTTGACAAATCTGTTGATTGCTTACTTGGATTAACTAAGAGGCAATACCAACTACTAGATAACTGTGGGTTACACACGTTACGGAAATTGCTGCACCATTTTCCGCGGTCATATGCTAATCTACAGAATGCACATGCTAAAATTGATGATGGGCAGTATTTGATCTTTGTTGGAGAAGTCTTATCTTCAAGGGGAGTTAAAGCTAGTTGTTCATTTTCATTTCTTGAGGTGATTGTTGGTTGTCAGATTGCAGACAGGGAATCAGCTTGTGAGAATGTGACTGACGAAGTTGAGCAAAAGAAGACAATTTATTTGCATTTGAAGAAATTTTTCCGTGGCACACGTTTTACTTATAAACCTTTCCTTAATAGTATTGCGAACAAGTATCAAGTGAGAGATATAGCATGTGTGAGTGGCAAGGTTAGGACTATGCGTGCTAAAGATCACTACGAGATGAGAGAATATCATATTGATGTGCTTGAAGATGGAAAAGATTTATCCCTTTGTGCTAAAGAGAGGCCATATCCTATCTACCCTTCAAAAGGTGGTTCAAACCCAACATTTCTTCGAGACATTATTGCAAGAGCTTTACATGCTTTGCCAGTCAATGTTGATCCAATTCCTAAAGATATCAGAGAGGAATTTGGACTCTTAAGTCTTCATGATGCATATTGTGGAATTCACAAACCTATGGATATAAGTGAAGCTGATTTGGCCCGCAAGCGACTTATATTTGATGAATTTTTTTACCTTCAGTTAGGACGATTATTCCAAATGCTCGAAGGTCTTGGCACACAAATAGAAAAGGATGGATTGCTAGAGAAGTATAAAAGACCAGAAAATAACACCGCGTGTACAGAGGAATGGTGCTGTCTCACCAAGAAGATTTTGGAGCTCCTTCCATATACTCTTACTTCTAGCCAACTGCAAGCTGTTTCAGAAATTATTTGGGATCTAAAAAGGCCAGTTCCAATGAATCGGCTACTACAGGGTGATGTTGGATGTGGGAAAACTATCGTAGCTTTTCTTGCATGCATGGAGGTTATTGGCTCTGGCTATCAGGCCGCTTTCATGGTTCCAACTGAGTTACTTGCAATCCAGCATTACGAACACTTGCTTACGTTGCTTGAAAACGTGGATGAAGTCAAGTGCAAGCCAACCGTTGCTTTACTCACTGGTTCAACCCCACTAAAACAATCACGGATAATTCGTAAGGGTATCCAGACTGGAGAGATTTCAATGGTCATTGGAACCCACAGTTTGATAGCAGAACGTGTGGAATTCTCAGCATTACGTATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTATTTTGCACTTCTTCAATTCCAAGTATGGAAGATGCTATTACAGATGGTTCCTCAAAAAGTGATGATTATATGGCTCCACATGTTCTTGCCATGTCTGCTACTCCCATCCCAAGAACACTTGCACTTGCTTTATATGGTGATATGTCACTGACACAGATAACCGGCTTACCACCAGGAAGAATTCCTGTTCAAACATACACCATTGAAGGAAATGACAAAGGATTCGATGACGTCTACAAGATGATGATGGATGAGTTGAAAGATGGGGGAAAAGTTTATCTTGTCTACCCAATTATTGAACTTTCAGAGCAGTTGCCTCAGCTTCGTGCTGCTTCTGCAGATATCGAGGTTATTTCGGACCGGTTCCCTGAATACAATTGTGGTTTATTACATGGAAGAATGAGAGGTGATGAAAAAGAAGAAACCTTAAGGAAGTTTAGGACTGGAGAATTGCACATACTACTTGCCACTCAAGTAATTGAAATTGGTGTTGACGTACCAGATGCATCGATGATGGTTGTGATGAATTCTGAGAGGTTTGGAATGGCCCAATTACACCAACTGAGGGGCCGAGTTGGACGCGGAACAAGACAGTCAAAATGTATATTAATAGCATCAACTGCCAGTAGTCTAAATCGTCTGAAAATACTGGAGCAATCGACAGATGGGTTTCATCTCGCAAATATGGACCTATTATTACGTGGGCCTGGTGACTTGCTAGGCAAGAAACAATCTGGACATCTTCCTGAGTTTCCTATTACCAGATTGGAAGTGGATGGGAATATTTTACAAGACGCACATGTTGCTGCACTGAAAATGTTAAGTGCTTCCCATGATCTGGAGAAATTTCCTGCACTTAAACTGGAGCTTGGCATGAGACAGCCGCTTTGCCTGCTAGGTGATTGA 3816 0.4044 MENLPQGYRPNVGVCLINRDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREETGIVSAEIIAEVDKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDDGEINLATGEADPEFAEWKWTSPEEVIEQAVDYKRPTYEEVIRTFKPYFQGNSISAKCKSTKCLLTGSSKWHYVCGISLVICCFYDVELTKLILLKNNILDDTAAKYLYFNYIFTCVHLRCDVRDSIENLDVLVIKKFLLNFPISKIIPSSDQSALSDSLTVRSSPSPSSATSDTLRRSTFHANNNIAMCLCCKQLRTVIVFQGNTNLFNTKMRCCNFLPFKFSKMCYRVKPKFTDKKFVEIDQHGVKSAVKLRKKVFALMDYNIPDLIENGSGEMKSKMNLEDSVDDFDISLIQKRFPSITLGSAPQVDLYDGTTSNSEATIISATEGFEQNFYDSSEARQVQNTLSEASWPFDRSSVTFSASRKDDSFPLTSQSEETLDEVTREDSQNKVGLQSQSNLTLNELSLDKSVDCLLGLTKRQYQLLDNCGLHTLRKLLHHFPRSYANLQNAHAKIDDGQYLIFVGEVLSSRGVKASCSFSFLEVIVGCQIADRESACENVTDEVEQKKTIYLHLKKFFRGTRFTYKPFLNSIANKYQVRDIACVSGKVRTMRAKDHYEMREYHIDVLEDGKDLSLCAKERPYPIYPSKGGSNPTFLRDIIARALHALPVNVDPIPKDIREEFGLLSLHDAYCGIHKPMDISEADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLEKYKRPENNTACTEEWCCLTKKILELLPYTLTSSQLQAVSEIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLTLLENVDEVKCKPTVALLTGSTPLKQSRIIRKGIQTGEISMVIGTHSLIAERVEFSALRIAVVDEQHRFGVIQRGRFNSKLFCTSSIPSMEDAITDGSSKSDDYMAPHVLAMSATPIPRTLALALYGDMSLTQITGLPPGRIPVQTYTIEGNDKGFDDVYKMMMDELKDGGKVYLVYPIIELSEQLPQLRAASADIEVISDRFPEYNCGLLHGRMRGDEKEETLRKFRTGELHILLATQVIEIGVDVPDASMMVVMNSERFGMAQLHQLRGRVGRGTRQSKCILIASTASSLNRLKILEQSTDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGNILQDAHVAALKMLSASHDLEKFPALKLELGMRQPLCLLGD 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02885 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1220 IPR027417 -
Car04g02885 1271 SMART ultradead3 816 1034 IPR014001 -
Car04g02885 1271 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 299 1271 - -
Car04g02885 1271 Pfam Helicase conserved C-terminal domain 1054 1165 IPR001650 -
Car04g02885 1271 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1047 1202 IPR001650 -
Car04g02885 1271 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
Car04g02885 1271 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Car04g02885 1271 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 299 1271 - -
Car04g02885 1271 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 1191 1249 IPR045562 -
Car04g02885 1271 CDD DEXHc_RecG 759 1027 - -
Car04g02885 1271 SUPERFAMILY Nudix 7 157 IPR015797 -
Car04g02885 1271 Hamap RNA pyrophosphohydrolase [rppH]. 2 160 IPR022927 -
Car04g02885 1271 TIGRFAM recG: ATP-dependent DNA helicase RecG 538 1239 IPR004609 GO:0003678|GO:0006281|GO:0006310
Car04g02885 1271 ProSitePatterns Nudix box signature. 40 61 IPR020084 GO:0016787
Car04g02885 1271 Pfam NUDIX domain 8 149 IPR000086 -
Car04g02885 1271 SMART helicmild6 1069 1166 IPR001650 -
Car04g02885 1271 Gene3D - 1033 1204 IPR027417 -
Car04g02885 1271 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Car04g02885 1271 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Car04g02885 1271 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 834 1023 IPR014001 -
Car04g02885 1271 SUPERFAMILY Nucleic acid-binding proteins 515 717 IPR012340 -
Car04g02885 1271 Pfam DEAD/DEAH box helicase 841 1008 IPR011545 GO:0003676|GO:0005524
Car04g02885 1271 Gene3D - 779 1024 IPR027417 -
Car04g02885 1271 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
Car04g02885 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 1028 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02885 Car-Chr4 55734093 55766364 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02885 04 55734093 55766364 Car04g02885 04 55734093 55766364 ECH