Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02871 ATGTTGGGTAGTACAATCCCAATCCTAACACCCTCCTTCAATCTCAACCCTTCGCATTTTGTCCCTTCAATCACAACAATAGCCAGAGTCACACTCTCTTCCTCTTCAAAATCACACTCCAAACTCACTCTGCTTCCCAGGTTCAGTCTTAGCAGCAATGGTTCTCCTGATCGCGCCCTTCATCCTCCCTCTCCCGGAATTGATGAACATGAAAGTGAATCGTCTTCCGACTTTGGTGATGACAATGTGGCCTTGTTTGTTCGTATGCTAGGCCTAGATCGCGATTTTCTTGATAGAGAGCAAGCTATAATTGCTCTTTGGCAATATTCACTTGGTGGAGAGAATTACATTAACAATATAATGCAATTTCCTGGCTGTATTAATCTTGTTGTCAACCTACTTAGGTCAGAGTCTAGTTCGTCGTGTGAGGCGGCTGCAGGTCTTTTGCGATCACTATCTTCAATCGACTTATATAGGAATTCTGTAGCAGATAGTGGAGCTATAGAAGAGATAAATAGATTGCTGACACAATCTTCTTTGGCTCCTGAGGTAAAGTTGCAGAGTATGAGTACACTGTGGAATTTATCTGTGGATGACAAGATCCGCGTTAAAGTTGCAAAGAGCGATACTCTTCTGTTAGCTATTAAGTACCTTGATGATGAAGATTCAAAAGTGAAGGAAGCTGCAGCGGGTGTTTTGGCAAATTTAGCACTGAGTCGTGTTAACCATGATATCATGGTTGAAGCAGGTGTTATTCCAAAATTGGCGAAGTTCTTAATGTCAGACTCCGAAGGATCTAAAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTCGTGAAGGACGAGTATTACAGAATTCTTGTTATTGAGGAAGGTTTAATTCCTGTTCCATTAATAGGTGCTGCAACCTACAAATCATACGCTCCACGTTTATATGAGTCGCCCGCATTTCCAGATGGTACAGAAATTGAAAGGACATACACAAAACCTTCTAGATTTGGTGCTTCAGAAGTACTTGTTGGATTAAATTTTGATAATAATGCTGACATAGATGAAGCAAAAGTCAATGCAATTATTGGACAGACACAACAGCAATTCCTTGTTCGTATTGGTGCGATAGAAATGGAAGAAACGGAACCTCATTCTGAACGTTCAAATGATGAGCGTGTTACGCTTTTACATTGGATCGATGGTGTTGCTCGTTTAGTACTGATACTGGAACTTGAAGATAAGTCAGCAATAGTAAGAGCTGCAGAGTCAATTGCTAGTGCATGTATCAATGAACATATGCGTATTGCATTCAAGGAGGCTGGTGCAATTAAGCATTTAGTACGGCTTTTGGCTTGCGATGATAATGCAATCCGGCTGGCAGCAGCTCAAGCTTTGGAAAGGCTGTCTGCTAGCAATGTTGTTTGCCGTGTAATTGAAGGCGAGGGTGGTTTAGGTCCTTTAGTTAGTATTTTAAAATGCTCAGATGTAGCTGGAGCTATTGTGGAAAAGTCTTTGAATGTACTTGGTCAGATATTAGACCCTAGCAAAGAGATGCAATTGAAGTTTTATGATGGATCAGTTAATGGATCTGAGAAGGTATTTGGTAGAGCCAAAAATGACGGTTCAACGGGATTAAGTAGCACTGAGCAAGCCGCATCGAAAACAAACCCAAGTTCATTCAGGAACGATATATTGGACTCGGTTTTCACTGCACGCCTTGTTGAGATTTTAAAGTCCCCATCACCCAGTTTACAAGAAAAGGCTGCATCTGTTCTTGAGTTTGTGGCATTGACAGACCCATCACTGACTGCGATTATCTCTGTGGATATTGAAAATGGTCTCAATTCTACTTTTCAGCAAAGTTTATTGAAAATCTCAGCAAACATGGAATCTGATATGGAAGATCAGTTTTCAGTGGCCCATGCTATTGAACTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTTACTAACAAGACTACTTGACTCTAAGCAAATTCGCGATAATTTAAATTTCTCCAGTTTCATTGACACGCTCCGCGAAATCCTCAAGTCAAATATTCCCCTCCGAAGCAAAGATTGGGTAGCTGCATGCCTAGTTAAACTAAGTTCTCTCTCTGGTTACGACACAAGTTCTAATAATCCAATCAATGTGGAAGTTACACTTTATGAGACAATTCCAAGACTTGTAGAACAGATCAAAACTTCATTCGCCTTAGAATCACAGGAAAATGCTGTTGTAGAACTTAATAGAATAGTATCTGAAGGAGTGGTAGATTGTACAGGAACTATTATTTCTGAAGGGGCAGTGTATTCTTTGGTGAAGTTGATAGAAGAAGGTAGTGAAAGAGGTGTTGAAGCAAGCTTGACAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTTGTAGCTGCTGGAGCAGTCCCAGCCTTAAAAAAAATTGTTCTGTCAGAGAAACCACAGTGGCAAAGGGCGCTGCATTTGCTCAGGAGCTTGCAAACATGA 2517 0.41 MLGSTIPILTPSFNLNPSHFVPSITTIARVTLSSSSKSHSKLTLLPRFSLSSNGSPDRALHPPSPGIDEHESESSSDFGDDNVALFVRMLGLDRDFLDREQAIIALWQYSLGGENYINNIMQFPGCINLVVNLLRSESSSSCEAAAGLLRSLSSIDLYRNSVADSGAIEEINRLLTQSSLAPEVKLQSMSTLWNLSVDDKIRVKVAKSDTLLLAIKYLDDEDSKVKEAAAGVLANLALSRVNHDIMVEAGVIPKLAKFLMSDSEGSKVIRKEARNALLELVKDEYYRILVIEEGLIPVPLIGAATYKSYAPRLYESPAFPDGTEIERTYTKPSRFGASEVLVGLNFDNNADIDEAKVNAIIGQTQQQFLVRIGAIEMEETEPHSERSNDERVTLLHWIDGVARLVLILELEDKSAIVRAAESIASACINEHMRIAFKEAGAIKHLVRLLACDDNAIRLAAAQALERLSASNVVCRVIEGEGGLGPLVSILKCSDVAGAIVEKSLNVLGQILDPSKEMQLKFYDGSVNGSEKVFGRAKNDGSTGLSSTEQAASKTNPSSFRNDILDSVFTARLVEILKSPSPSLQEKAASVLEFVALTDPSLTAIISVDIENGLNSTFQQSLLKISANMESDMEDQFSVAHAIELEEAGLAISAASRLLTRLLDSKQIRDNLNFSSFIDTLREILKSNIPLRSKDWVAACLVKLSSLSGYDTSSNNPINVEVTLYETIPRLVEQIKTSFALESQENAVVELNRIVSEGVVDCTGTIISEGAVYSLVKLIEEGSERGVEASLTILYNLSMDSENHSALVAAGAVPALKKIVLSEKPQWQRALHLLRSLQT 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02871 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 199 IPR000225 GO:0005515
Car04g02871 838 SUPERFAMILY ARM repeat 558 828 IPR016024 -
Car04g02871 838 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 838 - -
Car04g02871 838 Gene3D - 571 838 IPR011989 -
Car04g02871 838 MobiDBLite consensus disorder prediction 539 556 - -
Car04g02871 838 SMART arm_5 198 238 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 555 596 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 114 154 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 429 469 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 155 197 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 239 282 IPR000225 GO:0005515
Car04g02871 838 SMART arm_5 758 798 IPR000225 GO:0005515
Car04g02871 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
Car04g02871 838 SUPERFAMILY ARM repeat 70 596 IPR016024 -
Car04g02871 838 MobiDBLite consensus disorder prediction 537 556 - -
Car04g02871 838 Gene3D - 382 532 IPR011989 -
Car04g02871 838 Gene3D - 79 309 IPR011989 -
Car04g02871 838 MobiDBLite consensus disorder prediction 63 77 - -
Car04g02871 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 769 811 IPR000225 GO:0005515
Car04g02871 838 MobiDBLite consensus disorder prediction 52 77 - -
Car04g02871 838 Pfam Armadillo/beta-catenin-like repeat 429 469 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02871 83 315 U-box Gene Family AT2G23140 29.060 4.76e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02871 04 55613291 55620796 Car04g02871 04 55613291 55620796 ECH