LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01605	ATGTTTCGCGATACACTTGCCATGGCTGCCGCCGCCGCCACGACGCGGTGGCCGAATCAACCTAGTCAGTGGACTCGCGACCATGACAAGCTTTTCGAGAGAGCTCTTTTGATCGTGCCGGAGGATTTACCTGACCGGTGGGAGAAGATCGCCGAACAAGTTCCCGGTAAGTCGGCGGCGGAAGTTAGGGACCACTACGAAGCCTTGGTTCACGATGTTTTGGAGATTGATTCGGGTCGGGTTGAGGTACCGAGTTATTCGGATGACTCGGCGGCGAGTGGTGGTGGTGGTGGATTGTCTGATTGGGATTCTTCCAATCAAATCTCTTTTGGTTCGAAATCTAGACATGGTGATAACGAGAGGAAGAAAGGAACACCTTGGACTGAAGAAGAACATAGGCTGTTTCTTATTGGGCTAAGCAAATTTGGCAAAGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCTACTCAAGTCGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAATTCGGTGAAGAAAGAAAGAAAAAGATCAAGTATTCATGACATTACATCAGTTGACAGTAACTCTGCTCCCATGCCTATTGATCAGAACTGGGTTCCTCCTCCTGGTGGTTCAATTCAACAGTCTCAAGAAATGCATAATTATCCATCAAACAATTTGCAAGATCATATGGGTACATTTGGGTATTCAAACTATGGCTTTCAAATGTAA	732	0.4617	MFRDTLAMAAAAATTRWPNQPSQWTRDHDKLFERALLIVPEDLPDRWEKIAEQVPGKSAAEVRDHYEALVHDVLEIDSGRVEVPSYSDDSAASGGGGGLSDWDSSNQISFGSKSRHGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPMPIDQNWVPPPGGSIQQSQEMHNYPSNNLQDHMGTFGYSNYGFQM	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01605	243	Gene3D	-	18	83	-	-
	Car04g01605	243	ProSiteProfiles	SANT domain profile.	122	175	IPR017884	-
	Car04g01605	243	MobiDBLite	consensus disorder prediction	85	126	-	-
	Car04g01605	243	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	119	175	IPR017930	-
	Car04g01605	243	ProSiteProfiles	Myb-like domain profile.	22	70	IPR001005	-
	Car04g01605	243	CDD	SANT	24	70	IPR001005	-
	Car04g01605	243	SUPERFAMILY	Homeodomain-like	121	176	IPR009057	-
	Car04g01605	243	MobiDBLite	consensus disorder prediction	99	113	-	-
	Car04g01605	243	SUPERFAMILY	Homeodomain-like	22	78	IPR009057	-
	Car04g01605	243	CDD	SANT	126	171	IPR001005	-
	Car04g01605	243	SMART	sant	123	173	IPR001005	-
	Car04g01605	243	SMART	sant	20	72	IPR001005	-
	Car04g01605	243	Gene3D	-	125	177	-	-
	Car04g01605	243	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	122	174	IPR006447	GO:0003677
	Car04g01605	243	Pfam	Myb-like DNA-binding domain	126	171	IPR001005	-
	Car04g01605	243	Pfam	Myb-like DNA-binding domain	22	66	IPR001005	-
	Car04g01605	243	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	19	243	IPR043363	-
	Car04g01605	243	PANTHER	SYRINGOLIDE-INDUCED PROTEIN 1-3-1B	19	243	-	-
	Car04g01605	243	ProSiteProfiles	Myb-like domain profile.	119	171	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01605	Car-Chr4	16586623	16588552	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Car04g01605		Myb_DNA-binding	4.4e-11	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01605	04	16586623	16588552	Car04g01605	04	16586623	16588552	ECH