LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01581	ATGAACGCACAttgttcttcttcctcttcgatattctctatggcttctccttctcttcGCAACTCAACAACAAACCTTTCATTCTCAACTCTCATCCTCCCCCGTTCCTCATCCCCTCGCCGCCGACCTTCTTCCTTCAAAATCCAAGCCAAGATCCGCGAAATCTTCATGCCCGCACTCAGTTCAACAATGACTGAGGGTAAAATCGTCTCCTGGATTAAATCTGAAGGCGATACTCTCTCTAAAGGCGATAGTGTCGTCGTCGTTGAATCCGATAAAGCTGATATGGACGTTGAAACGTTTTACGATGGAATTCTCGCTGCTATTGTTGTTAATGAAGGTGAAACTGCTCCCGTTGGTGCTCCCATTGGTTTGCTTGCGGAGACTCctgaagatatcgctgaagctcaagctaaagccaaaTCCGTCAAATCCGcttcttcttcttcttcttcgtcttctCCGCCAATCGAGGATACTCCTCCGGTGAATTCTCAAcctcctcctcctcctccgccGGCGGCTAAGTCTGTTTCCGATGGTCCGAAGAAAATTGTGGCTACACCTCAGGCGAAGAAGCTTGCAAAACAGCACAAGGTCGACATTGCATCGCTCTCCGGGACAGGTCCGTTTGGCCGGATCACGCCGGAAGATGTCGAGGCTGCCGCCGGGATTACACCGTCGAAGAGTAATGTAGCTCCGGCGGTGGCGACTCCTACTCCGGCGGCGTCGGTTCAACCAACAAAATCAgctgctgctggttcttcttctgctgctTTGCTTCCAGGTTCCAGTGTTGTTCCTTTCACGACGATGCAATCTGCTGTTTCTAAGAATATGGTGGAGTCTCTCTCTGTGCCTACATTCCGTGTTGGGTATCCTGTCACCACTGATGCTCTTGATGCTCTCTACGAGAAGGTGAAACCTAAGGGTGTGACCATGACTGCTATATTGGCTAAGGCTGTTGCTATGGCACTTGTTCAGCATCCAGTTGTCAATGCCACCTGCAAAGACGGCAAGAACTTTCACTATAACAGTAACATTAATGTTGCTGTTGCTGTGGCAATCAATGGTGGCTTGATAACCCCAGTTCTTCAGGATGCTGATAAGTTGGACTTGTATCTGTTGTCTCAAAAATGGAAAGAACTAGTTGGAAAGGCTCGTTCAAAGCAATTGCAACCTCATGAGTATAATTCAGGAACTTTCACACTTTCCAATTTGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTTCCTCCAGGCCAGGGCGCTATCATGGCTGTTGGAGCATCAAAGCCTACTGTACTGGCCGATGCAGATGGATTCTTCAGAGTGAAAAGTAAAATGCTGGTGAATGTAACAGCTGATCACCGAATAATTTATGGGGCTGACCTGGCTGCCTTCCTTCAGACATTCTCTAAAATCATTGAAAACCCAGAAAGCCTAACATTATAG	1458	0.4266	MNAHCSSSSSIFSMASPSLRNSTTNLSFSTLILPRSSSPRRRPSSFKIQAKIREIFMPALSSTMTEGKIVSWIKSEGDTLSKGDSVVVVESDKADMDVETFYDGILAAIVVNEGETAPVGAPIGLLAETPEDIAEAQAKAKSVKSASSSSSSSSPPIEDTPPVNSQPPPPPPPAAKSVSDGPKKIVATPQAKKLAKQHKVDIASLSGTGPFGRITPEDVEAAAGITPSKSNVAPAVATPTPAASVQPTKSAAAGSSSAALLPGSSVVPFTTMQSAVSKNMVESLSVPTFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAVAMALVQHPVVNATCKDGKNFHYNSNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADADGFFRVKSKMLVNVTADHRIIYGADLAAFLQTFSKIIENPESLTL	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01581	485	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	77	106	IPR003016	-
	Car04g01581	485	Gene3D	-	48	152	-	-
	Car04g01581	485	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	179	223	IPR036625	GO:0016746
	Car04g01581	485	Gene3D	-	183	223	IPR036625	GO:0016746
	Car04g01581	485	MobiDBLite	consensus disorder prediction	136	184	-	-
	Car04g01581	485	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	265	484	IPR001078	GO:0016746
	Car04g01581	485	Pfam	Biotin-requiring enzyme	54	124	IPR000089	-
	Car04g01581	485	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC	10	485	-	-
	Car04g01581	485	Pfam	e3 binding domain	185	220	IPR004167	GO:0016746
	Car04g01581	485	Gene3D	-	259	484	IPR023213	-
	Car04g01581	485	SUPERFAMILY	Single hybrid motif	51	141	IPR011053	-
	Car04g01581	485	MobiDBLite	consensus disorder prediction	160	177	-	-
	Car04g01581	485	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	186	223	IPR004167	GO:0016746
	Car04g01581	485	MobiDBLite	consensus disorder prediction	1	21	-	-
	Car04g01581	485	MobiDBLite	consensus disorder prediction	141	159	-	-
	Car04g01581	485	CDD	lipoyl_domain	54	126	-	-
	Car04g01581	485	SUPERFAMILY	CoA-dependent acyltransferases	265	484	-	-
	Car04g01581	485	ProSiteProfiles	Biotinyl/lipoyl domain profile.	52	127	IPR000089	-
	Car04g01581	485	PANTHER	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	10	485	IPR045257	GO:0006086\|GO:0045254

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01581	Car-Chr4	16318264	16323393	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01581	19	485	Acyl Lipid Metabolism Gene Families	AT3G25860	72.956	0.0	641

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01581	04	16318264	16323393	Car04g01581	04	16318264	16323393	ECH