Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01579 ATGAAGGTTTTCGTGAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTGAAGCCACAAGACACGATTTCCGAAGTGAAGAAAAACATAGAAAATGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTGAAGGATGGTACCTCCTTGGAAGAAAATAAAGTAGCCGAAAATAGTTTCATTGTAATTATGCTTTCAAAGAGTAAGAATACACCTGGTGAAGGGTCTACTGCTTCAAATGCACCTCCAGCAAAGGCCCCACAGACGAGTGTGGCTCCTACTTCAACCCCCACAGTTTCTGTATCACCTCAAGCTCCTGCTGTCACTGCAGCACCGCCTCCATCTGTTGCTGCACCTTctccagctccagctcccactccagctacggctcctgctccTATATCTTCGGCGACTGCTACGGAAGGTTCCGATGTCTACGGGCAGGCGGCATCCAATCTAGTTGCCGGTAGCAACTTGGAGGAAACAGTTCAGCAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTTCGTGCTCTTCGAGCTGCCTTTAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGCTCCAGCAGCGTCTCGAGTGCCTGCAAGTGCACAACCTGCAAATCCTGCAGCTGCAGCTCCTCAAGCAGCACAACCTGCTCCTGTTACCTCAAGTGGACCTAATGCTAATCCTCTAGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTTCTGGTGCTGCTGGTGCCGGCTCTCTGGATTTTCTTCGGAACAGTCAACAATTCCAAGCATTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATCCTCATCTCATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCCTGATAAACGAACCAATGGAAGGTGGTGAAGGGAACCTATTGGGACAGATGGCAGGTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCTATTGAACGTCTTGAAGCAATGGGTTTCGATCGTGCTATAGTATTGGAGGTGTACTTCGCGTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGACCACATTCATGAGTTCGACGAACAATGA 1203 0.458 MKVFVKTLKGTHFEIEVKPQDTISEVKKNIENVQGVDVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKSKNTPGEGSTASNAPPAKAPQTSVAPTSTPTVSVSPQAPAVTAAPPPSVAAPSPAPAPTPATAPAPISSATATEGSDVYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPEQAEAPAASRVPASAQPANPAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNLLGQMAGGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHIHEFDEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01579 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 399 - -
Car04g01579 400 TIGRFAM rad23: UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Car04g01579 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 166 209 IPR015940 -
Car04g01579 400 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Car04g01579 400 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Car04g01579 400 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Car04g01579 400 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Car04g01579 400 MobiDBLite consensus disorder prediction 78 148 - -
Car04g01579 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Car04g01579 400 MobiDBLite consensus disorder prediction 78 114 - -
Car04g01579 400 SUPERFAMILY UBA-like 165 216 IPR009060 GO:0005515
Car04g01579 400 Gene3D - 347 394 - -
Car04g01579 400 Gene3D - 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Car04g01579 400 Pfam UBA/TS-N domain 355 390 IPR015940 -
Car04g01579 400 Pfam UBA/TS-N domain 168 206 IPR015940 -
Car04g01579 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Car04g01579 400 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Car04g01579 400 MobiDBLite consensus disorder prediction 218 259 - -
Car04g01579 400 CDD UBA1_Rad23_plant 162 211 - -
Car04g01579 400 Gene3D - 1 80 - -
Car04g01579 400 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Car04g01579 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 399 - -
Car04g01579 400 SMART uba_6 168 208 IPR015940 -
Car04g01579 400 SMART uba_6 355 392 IPR015940 -
Car04g01579 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Car04g01579 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Car04g01579 400 SMART CBM 272 315 IPR006636 -
Car04g01579 400 MobiDBLite consensus disorder prediction 116 139 - -
Car04g01579 400 CDD Ubl_Rad23 1 74 - -
Car04g01579 400 SUPERFAMILY UBA-like 335 398 IPR009060 GO:0005515
Car04g01579 400 SUPERFAMILY XPC-binding domain 271 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Car04g01579 400 Gene3D - 161 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01579 Car-Chr4 16305034 16309738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01579 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 5.74e-10 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01579 04 16305034 16309738 Car04g01579 04 16305034 16309738 ECH