Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01573 ATGATGAATCTGACTCCAGAAAAATTAAGAGGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGTGGAGATCCCTCTCCCACTTCTATCTGCAGTGTCTTTCTCCTCTGAAAATTCCTTCTGTGAGAAGGAAAAGATTACAAAGAAGAAGACTTGTCACTCAGTTCAACCTCATATCAAGAAGAGGTCGGTTTCATCAACCCCTGCAACACCAACTAGGAGACAATCTAATGCCAAATACCGCGGCGTTCGCATGAGGAAGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCATTCAAAGGTGCTCGCATATGGTTAGGAACTTACAACACTGCTGAAGAGGCTTCTCAAGCCTATGAATCCAAAAGGATTGAATTTGAACGTGAAGCTAAAGCAAAATCTGAAGCAAATGCAGCAAATAATAATGGTGATGGTTCTTTTACTCAAGAAAACAAGAGTAGTTACTCTAACTCTCCTTCTGCAGATGCTGTTGCTGCTACTACGTTTTCTGTATCAGAGAAATTCTCTACTACAGAAGACTCTGAGAGTTTGTTCTCACACACATCGCCTTCATCGGTGCTTGAATTGGATACCTCAGCTTCCCATTTGATGGAGCCTGAAAAGCCCGATGTTTCATCGAGCAATGAAGCAATGGAGGAAGCTGATGAGGAAGCCAGTGAATTAGTTGCTCTTCAATTAGAAGAGCTAGAGATACCAGATCTGAGTGTTTTGAACTTGCCAGAACCATCTATGGTTGATATTGATGCTCCATCTGGATGTGATCCCAACCTTGGGTTTGATTTTGATCGGTTTACCTTTGATGATTATAGACATGGTTTCGAAGACTTTGGTGATTTTAGGGATATCCACATTCATGGTTTTGATGACAATGAACCTAGTGAGCTTCCTGATTATGATTTTGCTGACATGGGTGCAGATGATGAATTTGCTGGATGGATTGAGGAACCCCTCTACAACAACATACCTTGTGCCTAA 1002 0.4112 MMNLTPEKLRGAXXXXXXXXXXVVEIPLPLLSAVSFSSENSFCEKEKITKKKTCHSVQPHIKKRSVSSTPATPTRRQSNAKYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKRIEFEREAKAKSEANAANNNGDGSFTQENKSSYSNSPSADAVAATTFSVSEKFSTTEDSESLFSHTSPSSVLELDTSASHLMEPEKPDVSSSNEAMEEADEEASELVALQLEELEIPDLSVLNLPEPSMVDIDAPSGCDPNLGFDFDRFTFDDYRHGFEDFGDFRDIHIHGFDDNEPSELPDYDFADMGADDEFAGWIEEPLYNNIPCA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01573 333 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 Gene3D AP2/ERF domain 80 140 IPR036955 GO:0003700|GO:0006355
Car04g01573 333 SUPERFAMILY DNA-binding domain 81 128 IPR016177 GO:0003677
Car04g01573 333 ProSiteProfiles AP2/ERF domain profile. 81 141 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 Coils Coil 111 131 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 60 79 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 137 162 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 134 162 - -
Car04g01573 333 SMART rav1_2 81 135 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 Coils Coil 216 236 - -
Car04g01573 333 CDD AP2 80 128 IPR001471 GO:0003700|GO:0006355
Car04g01573 333 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 22 332 - -
Car04g01573 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 332 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 184 200 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 184 227 - -
Car04g01573 333 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01573 Car-Chr4 16222290 16223291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01573 63 332 AP2-EREBP Transcription Factor Family AT1G68550 34.875 1.16e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car04g01573 AP2 1.2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01573 04 16222290 16223291 Car04g01573 04 16222290 16223291 ECH