Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01572 ATGCCTCCTGTGTTGCCTGATTTTTCTAGCTCAGTTAAGCTAAAGTATGTGAAACTTGGTTACCAATATCTTGTTAATCACATTATAACACTCACTCTTATTCCCATCATGCTTGGTGTTTCAATTGAACTTATACGTTTAGGTCCTGATGAAATAATCAACCTATGGAACTCTCTAAACATTAATCTTGTTCAAATCCTCTGTTCTTGTTTTCTTGTTATTTTCATATCCACTGTTTACTTCATGTCAAAACCACGCACAATCTACTTAGTTGATTATGCTTGTTTCAAACCACCTGTTACTTGTCGTGTTCCTTTTGCTACTTTCATGGAACATTCAAGACTCATCCTTAAAAACAACCCTAAAAGTGTCGAATTTCAAATGAGGATTCTTGAACGTTCTGGTCTTGGTGAAGAAACAAGTCTCCCACCTGCTATTCATTATATACCACCAAAACCAACCATGGAATCTGCAAGAGGTGAAGCTGAACTTGTTATATTCTCAGCTATGGATTCTTTGTTAAACAAAACAGGTCTTAAACCAAAAGACATAGACATACTCATAATAAATTGTAGTCTTTTTTCTCCAACACCTTCTTTGTCAGCTATGGTTATAAACAAATACAAATTAAGAAGTAACATAAAAAGTTTCAATCTTTCTGGTATGGGTTGTAGCGCAGGACTAATTTCCATCGATTTAGCGCGCGATCTTCTTCAAGTTCATCCGAATTCAAACGCCATAGTTGTTAGTACTGAAATTATAACACCAAATTATTATAAAGGAAATGAAAGAGCTATGCTTTTACCAAATTGTTTGTTTAGAATGGGTGGTGCTGCTATTCTATTATCAAACAGAGGGTCAGAATCGAAAAGAGCAAAATACAGATTAGTTCATGTTGTTAGAACACACAAAGGAGGAGATGATAAAGCTTTTCGATGTGTTTTTGAAGAAGAAGATAAAGAAGGTAAAGTTGGGATTTCACTTTCAAAAGATCTTATGGCAATTGCAGGTGAAGCTCTTAAATCAAATATAACAACAATGGGTCCACTTGTTTTACCAGCTTCAGAACAGTTACTTTTTCTTTTAACACTCATTGGTAGAAAAATCTTTAATCCTAAATGGAAACCATATATTCCTGATTTCAAACAAGCTTTTGAACATTTTTGTATACATGCTGGTGGTCGTGCTGTGATTGATGAGTTACAGAAGAATCTTCAACTTTCAGCTGAACATGTGGAAGCATCAAGGATGACACTTCATAGATTTGGAAACACATCTTCTTCATCATTATGGTATGAACTCAACTACATTGAATCCAAAGGAAGGATGAAGAAAGGAGACAGAGTATGGCAGATAGCATTTGGCAGTGGTTTTAAATGCAACAGTGCTGTTTGGAAATGTAACAGAACCATTAAAACACCTGTTGATGGAGCTTGGTCAGATTGTATTCATCGTTATCCTGTTCATATTCCTGAGATTGTTAAACTCTAA 1491 0.3508 MPPVLPDFSSSVKLKYVKLGYQYLVNHIITLTLIPIMLGVSIELIRLGPDEIINLWNSLNINLVQILCSCFLVIFISTVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETSLPPAIHYIPPKPTMESARGEAELVIFSAMDSLLNKTGLKPKDIDILIINCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAIVVSTEIITPNYYKGNERAMLLPNCLFRMGGAAILLSNRGSESKRAKYRLVHVVRTHKGGDDKAFRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTMGPLVLPASEQLLFLLTLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKKGDRVWQIAFGSGFKCNSAVWKCNRTIKTPVDGAWSDCIHRYPVHIPEIVKL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01572 496 SUPERFAMILY Thiolase-like 273 468 IPR016039 GO:0016746
Car04g01572 496 CDD CHS_like 73 465 - -
Car04g01572 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 - -
Car04g01572 496 SUPERFAMILY Thiolase-like 73 289 IPR016039 GO:0016746
Car04g01572 496 Pfam FAE1/Type III polyketide synthase-like protein 80 368 IPR013601 GO:0006633|GO:0016020|GO:0016747
Car04g01572 496 Gene3D - 111 466 IPR016039 GO:0016746
Car04g01572 496 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 384 466 IPR013747 -
Car04g01572 496 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 496 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car04g01572 496 PANTHER 3-KETOACYL-COA SYNTHASE 4 495 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01572 Car-Chr4 16187711 16189670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01572 5 496 Miscellaneous Gene Families AT1G25450 82.927 0.0 880
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01572 04 16187711 16189670 Car04g01572 04 16187711 16189670 ECH