Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01570 ATGACAAAGAACGTGGCTAACGCGGTTGGAGGCAAAACCGCTAGAGCTTGTGATAATTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCCGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCTGTTCATTCGGCTAATTCATTAGCTCGAAGACATGAAAGGGTTCGTTTGAAAACGGCGTCGTACAAGTCAACTGGTAGTGGTAGTGGTAGTGGTGAATTCATCAATTGTGGTCCATCTTGGCACCATGGTTTCACCAAGAAAGCAAGAACACCAAGACATGGGAAACAATACTCTGCTTCAACTACTTTACAAACAACTAAATCATCCTCTCCGGGGAGGAAGAATTATAATCCGTTCCATCTCGTCCCCGAAATGGGTTTTGATGAGGTTAATTCTATTTCTCATGAAGATAATGAGGCGCAGCTTCTTTATCGAGTACCAATTTTTGATCCTTTTGTTGTCGAGTTATGTACTAGTCCTCGTTCTGAAGGAGGACCAGGAGCAGTAGTTGTTACTTCTGCTTTCGCTTCTGATGTTAACACGAGCGAAAACAAAGTTCAATTGGGTGGTGATAGTAATTATGAGATGGAAAACTTTCACGGGATTCTCCCATCTGATATTGAACTTGCTGAATTTGCAGCTGATGTTGAAAGTTTATTGGGTAGGGGACTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGTTTGGTTGATACAAaacgtgaggtgtacagtgaggggaaggtgaaggtggaagatgaagAGAGCCATGAAGTGGTTGTTTTAGAAGGATACAAAATTGAGGGAGATAATATTGAGATGGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGACTCTAATGAAACAAGTGAAGAGGTGAAGGAGAAGGTTGAGTTGGAAATAGGGAAGTGTGGAGAACAAAATGAAAATAATAATAATAAGGGGAAAAGGAAGATATCCTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATGGCCGAAAGTGTCCCTGGACTACTGGTGACAAGCCAAATTTGGATGCTGATGAGACCTGGCCTGATTGCACGGGATCTTGTGGAACGGAGGTTCTTTATCCTTACGGTGAATTAGGTGGATATGAGTGCCATCCAGTAATGGCAGACGGAGGGAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAACGAAGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGTAGATTTGTGAAGAGAGCTTCTTTTGCAGTTCCAACATTTCCTTTGCTAAAATAG 1338 0.4006 MTKNVANAVGGKTARACDNCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSTGSGSGSGEFINCGPSWHHGFTKKARTPRHGKQYSASTTLQTTKSSSPGRKNYNPFHLVPEMGFDEVNSISHEDNEAQLLYRVPIFDPFVVELCTSPRSEGGPGAVVVTSAFASDVNTSENKVQLGGDSNYEMENFHGILPSDIELAEFAADVESLLGRGLENECIGMEELGLVDTKREVYSEGKVKVEDEESHEVVVLEGYKIEGDNIEMGKESSFELNFDYDDSNETSEEVKEKVELEIGKCGEQNENNNNKGKRKISLQLDYDAVIIAWDGRKCPWTTGDKPNLDADETWPDCTGSCGTEVLYPYGELGGYECHPVMADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01570 445 MobiDBLite consensus disorder prediction 90 117 - -
Car04g01570 445 CDD Bbox1_BBX-like 16 59 - -
Car04g01570 445 MobiDBLite consensus disorder prediction 97 117 - -
Car04g01570 445 Pfam B-box zinc finger 14 57 IPR000315 GO:0008270
Car04g01570 445 ProSiteProfiles CCT domain profile. 391 433 IPR010402 GO:0005515
Car04g01570 445 Pfam CCT motif 391 433 IPR010402 GO:0005515
Car04g01570 445 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 438 - -
Car04g01570 445 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Car04g01570 445 SMART bboxneu5 12 59 IPR000315 GO:0008270
Car04g01570 445 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 3 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01570 Car-Chr4 16138466 16140562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01570 1 433 C2C2-CO-like Transcription Factor Family AT1G25440 44.921 8.32e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car04g01570 zf-B_box 4.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01570 04 16138466 16140562 Car04g01570 04 16138466 16140562 ECH