Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01564 ATGATTCTTCTGTCCAGGAGACCAGATGGAAACCCTTTAGACCTTAACAATCTTCCTGATGACAACTCTAGAGATCATCTTTCTAAACAACTTCTTCACAACACCTCCTCACCTGTTACAGGTTATAAGGAAAAAGAAGATGATAGAAAAGATGAGGAGTGTGGAAAGGTGTATGAGTGTAGATTTTGTTCCCTCAAATTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAGGAAACAGAGAAATTGAACAATGCTCGTCAACTGCTCTTACGTAATGATCACAACCTTGTTGCTCAAGCTGCCCTTCACTTAGGATGTTATCCAACAATAGCAACACACATGGGAGATCATCACACAACAGTACCTATGAGATACCAAAGATCAATGTCTGGTTCATCATCCTCAAACCAACAAGTACAACAATATTTGTATGCATCTTCATCTTCACCTTCACGGCAAGTATCTTTCCCAACACACTTGAATATTCCACATCAGCAACAAATAAACAATTACCATATGAGTCACGTGATGAGTAACAGCCAGCAGCAACAATATGGAGGTGAGTCAAGTAACTATACTTGCATAGGTGCACCGGTGAGACAAGGTGGTTATCCTTCAACAATGAATCGGTTTGAAGATGGATTGTAG 669 0.4126 MILLSRRPDGNPLDLNNLPDDNSRDHLSKQLLHNTSSPVTGYKEKEDDRKDEECGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDHNLVAQAALHLGCYPTIATHMGDHHTTVPMRYQRSMSGSSSSNQQVQQYLYASSSSPSRQVSFPTHLNIPHQQQINNYHMSHVMSNSQQQQYGGESSNYTCIGAPVRQGGYPSTMNRFEDGL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01564 222 Coils Coil 79 99 - -
Car04g01564 222 PANTHER ZINC FINGER PROTEIN JAGGED 7 216 IPR045320 GO:0003700
Car04g01564 222 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Car04g01564 222 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Car04g01564 222 MobiDBLite consensus disorder prediction 1 48 - -
Car04g01564 222 PANTHER ZINC FINGER PROTEIN JAGGED 7 216 IPR031113 GO:0007275
Car04g01564 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Car04g01564 222 Gene3D Classic Zinc Finger 34 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01564 Car-Chr4 16057949 16062037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01564 6 209 C2H2 Transcription Factor Family AT1G13400 44.601 1.16e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01564 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01564 04 16057949 16062037 Car04g01564 04 16057949 16062037 ECH