Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01556 ATGAACTCCACAAGAACACTAGCTATGTCCACAAGTACAAAGAGAGAGTTTGGTTCTAATAAAATTGAAGAAAATGAGTTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTATTAATTCACTATATTGCTCATCATGGTGAAGGTCGTTGGAATATGTTAGCAAAAAGTGCAGGATTGAAGAGGACTGGTAAAAGCTGCAGACTTAGATGGCTTAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTACTCCTCAAGAACAATTGTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAACATCTACCAGGAAGAACGGATAATGAGATAAAGAATTATTGGAGAACAAGGGTGCAGAAACAAGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAAATGGAACAGAACACTTCTCCAAGTTCTCATCATCACTCTTCAATAACAACAAATATGAATTTTGTGAATTCTATTGAAGCTTCAACTAGCTCAATGTCAACAACAAGCTTCAATGTTCCTTCTATGTCTCCATCATCATCTCATCCACAAAGTGGATTATTCATTGATTCTTCTTCAAGTGAAAACCATTTAAGCAATCCTTCCTTGGATTTCTTCCAATTTTCACAGCCACTTGAAATTTCAGAAAATTCAAGTGCTCCAAATGTGTTGGATAACACTGTTTATAGCTGTCCAATTCAGAACAACTACAATATTGATGACACAAATAACTATGGTTTGGAAGGTTTAAACTTTGATCCATTGTCTTCAATGGAAACTTATGACTTTTCACAGTTTGATTTTCAATCTGGTGGAAGTGGCTGGATGTTAGACAATATGGCTAATACTTTGTGGAATATGGATGCTATGTGA 945 0.364 MNSTRTLAMSTSTKREFGSNKIEENELRRGPWTLEEDSLLIHYIAHHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNTSPSSHHHSSITTNMNFVNSIEASTSSMSTTSFNVPSMSPSSSHPQSGLFIDSSSSENHLSNPSLDFFQFSQPLEISENSSAPNVLDNTVYSCPIQNNYNIDDTNNYGLEGLNFDPLSSMETYDFSQFDFQSGGSGWMLDNMANTLWNMDAM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01556 314 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 11 312 - -
Car04g01556 314 CDD SANT 86 125 IPR001005 -
Car04g01556 314 Gene3D - 85 127 - -
Car04g01556 314 Gene3D - 26 82 - -
Car04g01556 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Car04g01556 314 SMART sant 81 129 IPR001005 -
Car04g01556 314 SMART sant 28 78 IPR001005 -
Car04g01556 314 MobiDBLite consensus disorder prediction 1 16 - -
Car04g01556 314 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Car04g01556 314 CDD SANT 31 76 IPR001005 -
Car04g01556 314 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Car04g01556 314 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Car04g01556 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Car04g01556 314 MobiDBLite consensus disorder prediction 191 219 - -
Car04g01556 314 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Car04g01556 314 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Car04g01556 314 MobiDBLite consensus disorder prediction 1 22 - -
Car04g01556 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 312 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01556 Car-Chr4 15923409 15925184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01556 24 167 MYB Transcription Factor Family AT1G68320 82.639 4.74e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g01556 Myb_DNA-binding 5.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01556 04 15923409 15925184 Car04g01556 04 15923409 15925184 ECH