LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01529	ATGTTCCCTTTCCCTTTCATTTTCCTCTTTTTTCTTCTCTGTTGCAACATTCTTTCACCTCTTGTTGTTAATTCTCTAAACTCCGAAGGCTATGTTCTTTTAACACTAAAACAGTTCATCAATGACCCACAAAATTCCATGTCTAACTGGAATTCTTCTGATGAAAATCCATGTTCATGGAATGGAATCACTTGCAAAGACCAAACTGTTGTTTCCATTAGTATCCCAAAAAGGAAACTTCATGGTTCTCTTCCTTCTTCACTAGGATCTCTTTCACAGCTTCGTCATGTTAACTTCAGGAACAATGAACTGTTTGGAACTTTGCCTCAACAGTTATTTCAAGCTCAAGGACTTCAAAGTTTGGTGCTTTATGGGAATTCATTTTCTGGGTCTGTTCCAAATGAGATTCAGAATCTAAGGTACCTTCAAACTCTTGATTTGTCACAGAATTTCTTTAATGGGTCATTGCCTGCTGAAATTGTTCAATGTAAGAGACTTAAAACACTTGTTATCAGTAGAAACAATTTCACTGGCTTTTTGCCTGTTGGGTTTGGTGCTGGTTTGTCTTCTCTTGAAAAATTGGATCTTTCTTTCAATCAATTTAATGGTTCAATTCCTAGTGACATGGGAAATTTGTCTAGTTTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTTAATCCCTTCTAGCCTTGGAAACTTACCTGAGAAGGTTTATATTGATCTTACTTACAATAATTTAAACGGTCCTATACCTCAAAATGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTTTGTGTGGTCCACCTTTGAAGAATCCATGTGGTTCTGATACTCCTACTAGTTCACCTTCTTCATATCCAAATATTCCTGAGAATCCATCTCATGATGGTGGAATTGGTTCTGTGAAAAGTGAGAAAAACAAAGGGCTGAGTAAAGGTGCTGTTGTTGGCATTGTTGTTGGTGATTTAATTGGAATTTGTCTTTTAGGTTTGTTGTTCTCTTTCTTTTACTCTAGAGTTTGTGGTTTTAACCAGGATCAAGATGATAATGATGTTAACAAAGGAAGGAAAAGAAGGAAAGAATGTTTGTGTTTCAGAAAAGATGAATCTGAGGCTCTATCTGATAATGTTGAACAATATGATCTTGTTCCATTAGATTCCCAAGTGGCCTTTGATTTGGATGAACTTCTTAAGGCTTCAGCTTTTGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTGCTTGAAGAAGGGCTTGCTTTGGCTGTGAGAAGATTGGGAGAGGGGGGTTCTCAAAGGTTTAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTGAGACATCCAAATATTGCTACTCTTAGAGCTTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATTCCAAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGTCACATTTACACCGCTATCTTGGTCGGACCGATTAAAAATCATGAAAGGAATTGCAAAAGGATTGGTCTATCTTCATGAATTCAGCCCCAAGAAATATGTCCATGGAGATCTAAAGCCAAGTAACATACTTCTTGGACATGACATGACACCCCGCATTTCCGATTTCGGACTAGGACGCCTTGCAAACATCGCCGGAGGTTCCCCGACCTTACAATCGAACCGAGTGGCTGCAGAGAAACTACAAGAAAGACAGAAGAGCTTGTCCACCGAAGTCGGAACTAACATTTTGGGAGATGGTTATCAAGCTCCAGAAGCACTTAAAGTGGTGAAGCCATCACAAAAGTGGGATATTTATTCATATGGTGTGATTTTGTTAGAAATGATCACAGGAAGATTACCAATTGTTCAAGTTGGTAACTCAGAAATGGACCTTGTCCAATGGATACAGTTCTGCATTGAAGAGAAGAAGCCACTCTCAGATGTATTGGATCCTTACTTGGCTGAAGATGCAGATAAAGAGGAAGAGATAATTGCAGTTTTGAAGATTGCAATGGCTTGTGTTAATAGTAGCTCTGAAAAGAGACCTACAATGAGGCATGTACTTGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA	2136	0.3834	MFPFPFIFLFFLLCCNILSPLVVNSLNSEGYVLLTLKQFINDPQNSMSNWNSSDENPCSWNGITCKDQTVVSISIPKRKLHGSLPSSLGSLSQLRHVNFRNNELFGTLPQQLFQAQGLQSLVLYGNSFSGSVPNEIQNLRYLQTLDLSQNFFNGSLPAEIVQCKRLKTLVISRNNFTGFLPVGFGAGLSSLEKLDLSFNQFNGSIPSDMGNLSSLQGTVDLSHNHFSGLIPSSLGNLPEKVYIDLTYNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNPCGSDTPTSSPSSYPNIPENPSHDGGIGSVKSEKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQDDNDVNKGRKRRKECLCFRKDESEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLVTFTPLSWSDRLKIMKGIAKGLVYLHEFSPKKYVHGDLKPSNILLGHDMTPRISDFGLGRLANIAGGSPTLQSNRVAAEKLQERQKSLSTEVGTNILGDGYQAPEALKVVKPSQKWDIYSYGVILLEMITGRLPIVQVGNSEMDLVQWIQFCIEEKKPLSDVLDPYLAEDADKEEEIIAVLKIAMACVNSSSEKRPTMRHVLDALDRLSVSSD	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01529	711	Pfam	Protein kinase domain	413	701	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g01529	711	SMART	LRR_typ_2	188	212	IPR003591	-
	Car04g01529	711	SMART	LRR_typ_2	91	115	IPR003591	-
	Car04g01529	711	SMART	LRR_typ_2	139	163	IPR003591	-
	Car04g01529	711	Gene3D	Ribonuclease Inhibitor	26	184	IPR032675	-
	Car04g01529	711	Gene3D	Ribonuclease Inhibitor	185	285	IPR032675	-
	Car04g01529	711	Gene3D	Transferase(Phosphotransferase) domain 1	483	711	-	-
	Car04g01529	711	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	6	710	-	-
	Car04g01529	711	SUPERFAMILY	L domain-like	27	280	-	-
	Car04g01529	711	MobiDBLite	consensus disorder prediction	283	300	-	-
	Car04g01529	711	Gene3D	Phosphorylase Kinase; domain 1	376	482	-	-
	Car04g01529	711	Pfam	Leucine rich repeat N-terminal domain	27	65	IPR013210	-
	Car04g01529	711	SUPERFAMILY	Protein kinase-like (PK-like)	412	703	IPR011009	-
	Car04g01529	711	CDD	STKc_IRAK	413	706	-	-
	Car04g01529	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	531	543	IPR008271	GO:0004672\|GO:0006468
	Car04g01529	711	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	6	710	-	-
	Car04g01529	711	SMART	serkin_6	412	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g01529	711	MobiDBLite	consensus disorder prediction	279	312	-	-
	Car04g01529	711	ProSiteProfiles	Protein kinase domain profile.	407	706	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01529	Car-Chr4	15586277	15589258	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01529	7	711	Receptor kinase-like Gene Family	AT2G01210	67.737	0.0	981

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Car04g01529		Pkinase	9.6e-33	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01529	04	15586277	15589258	Car04g01529	04	15586277	15589258	ECH