Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01528 ATGGACTCAAACACTTCTAGCTTTATTTTGAACTCTTCAAATTTTCACTCAGTTTTCTACCAGGAAAAACAGGATCATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAACTGTTCAACATGATGCTTATCATTCTTCTACTAACTTGTATGATGATGACCTTATGGATTGGCCTAATGTGAAGAATTCAAGCACAACACATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGTGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGGGTCTCCATTGGTAGGAAAATTTGTATTCTTGACCATGGAGGTTACTCAAGTCTAGCTATTCAATTGGAAGACATGTTTGGTAGCCAGTCACTTTCTGGTACAAGATTGTTTCAATCTGGATCAGAGTATTCATTATTCTACAAGGACAGAGAAGACAATTGGAGGGCTGTTGGTGATGTCCCTTGGAAGGAGTTTGTAGAATGTGTGAAAAGGTTAAGGATTGCAAGAAAGAATGCAGACTATAGTGTTAACATTTCATGTTATAAATAA 564 0.3759 MDSNTSSFILNSSNFHSVFYQEKQDHDGIIDLGLSLGTVQHDAYHSSTNLYDDDLMDWPNVKNSSTTHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSQSLSGTRLFQSGSEYSLFYKDREDNWRAVGDVPWKEFVECVKRLRIARKNADYSVNISCYK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01528 187 SUPERFAMILY CAD & PB1 domains 89 172 - -
Car04g01528 187 Gene3D - 83 185 - -
Car04g01528 187 ProSiteProfiles PB1 domain profile. 89 177 IPR000270 GO:0005515
Car04g01528 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 178 IPR003311 GO:0005634|GO:0006355
Car04g01528 187 Pfam AUX/IAA family 57 175 IPR033389 -
Car04g01528 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01528 Car-Chr4 15579982 15582388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01528 84 172 B3 DNA Binding Superfamily AT1G19220 37.079 7.54e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Car04g01528 AUX_IAA 3.8e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01528 04 15579982 15582388 Car04g01528 04 15579982 15582388 ECH