Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01516 ATGTTCAATACTTCACCGATCAAAATGCACAACAAGGACGTTTGTTCTCCATCATCTAAAGGTGGATTCGGCGTCAACACCGCCGGCCACATGCAGTCGAACGCCGGCGCACTTGCTTCATTGTACTCCGCTCTGACTAACGAGAATCATCCATCCCTTTCTGGAAACTGCAGCAACGGCGGAGGCGTATCGCTTTACCAGTACTCCGACTCAGGAACTGAATACGACTCGTGCGTGATACAGAAGCATCAAGATATGGTGAATCGTCACAGTATGTGCCTCAGCCGTCTTGTGGAAACTTCGAAAGAGGTGGAAGCTCTGCAGCAGGAGAACGGACAGCTCCGTGCATTGAATAAGGAACTGCAGAAGCAACTGAACCTCCTCATTCAGGCGTCACTGGAGAATCGATATGGTAGTGGTGGAGGCTCCTCCGGCCAAACACAAACGACTCCGTTTGACGTTTTACACGGTTTCCATAGCTTGAATCTTGGCGATGGTAAAGAGAACTGTGCTGATTGGaataacaataacataaataataataacaaGGATCTGCAAGAAGTTTCTGATGAGAGTCCAACTAGCGTGATAGAGAATAACGGTGTTGAAGTGGAGAGGTTCTCGTTGCCAAAGAGCATTTCTGTTAGATCCAATGGCTACTTGAAAATGGCTCAGCCTCCAACCGTTGCCACTAATAACAGTAATGCTTGTCGCACCAAAGGCGCTACCCGCTCCCGCGCGTCTTCCACTCAACCTGACGCAGTTCAAAAGGTATATGTGCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTATAACCAGGGGATGTTCAAGACTGAGTTGTGTAACAAATGGCAGGAAACTGGAACATGCCCTTATGGAGACCACTGCCAATTTGCTCACGGCATTGGTGAGCTACGCCCAGTCATTCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATAGATGTCATTTCCGTCATGCACTTAATGAACAAGAAAGATTATCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 1089 0.4793 MFNTSPIKMHNKDVCSPSSKGGFGVNTAGHMQSNAGALASLYSALTNENHPSLSGNCSNGGGVSLYQYSDSGTEYDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRALNKELQKQLNLLIQASLENRYGSGGGSSGQTQTTPFDVLHGFHSLNLGDGKENCADWNNNNINNNNKDLQEVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQPPTVATNNSNACRTKGATRSRASSTQPDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALNEQERLSQPKPRSMKLER 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01516 362 Coils Coil 97 134 - -
Car04g01516 362 Gene3D - 313 349 - -
Car04g01516 362 Gene3D - 274 312 - -
Car04g01516 362 MobiDBLite consensus disorder prediction 225 252 - -
Car04g01516 362 SUPERFAMILY CCCH zinc finger 276 311 IPR036855 GO:0046872
Car04g01516 362 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Car04g01516 362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 55 351 - -
Car04g01516 362 SUPERFAMILY CCCH zinc finger 313 347 IPR036855 GO:0046872
Car04g01516 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Car04g01516 362 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Car04g01516 362 PANTHER CCCH ZINC FINGER/TIS11-RELATED 55 351 IPR045877 GO:0003729
Car04g01516 362 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Car04g01516 362 SMART c3hfinal6 279 306 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01516 Car-Chr4 15400083 15404384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01516 68 357 C3H Transcription Factor Family AT1G68200 52.685 2.96e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g01516 zf-CCCH 2.9e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01516 04 15400083 15404384 Car04g01516 04 15400083 15404384 ECH