Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01512 ATGTCTGTTTCTGAAAGGGTTGCTTTTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAGAGTTCGACTGGAGGGAATGAAAGGGAGAGATACACATCTACTCTTTTGCACGACAGGCATCTTATTAAGAAGATTACTTGCTGATAGAAACCTTAAAGGTGTAACTCATGTTATTGTGGATGAAATACATGAACGTGGGATGAATGAAGATTTTCTACTTATTATCCTTAAAGATCTCCTTCCTCATCGGCCCAAACTCAAACTTATTTTGATGAGTGCTACCCTAGATGCAGAGCTGTTCTCTTTGTACTTCAACGGGGCTCCAATAGTGAACATACCGGGCCTTACACACCCTGTTAGAACTCTTTTCTTGGAGAACATTCTTGAAATGACGGGCTATCGATTGACTCCTTGTAATCAAGTTGATGATTATGGTCAAGAAAGGTCGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGAAAAAGCCAAATTGCTTCTGCAGTAGAGGATGCAATTAGATCTGCTGATTTCAAAGATTACAGTCTTCAAACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTTTTGGTTTTAATCTCATAGAATATATCCTATGCAATATATGTGAGAATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGGTGGGATGATATAAGCTCTCTGAAAGAGAAGCTACAGGCACATGCTGTCTTGGGAGATTCTAAGCGTGTTTTGCTGCTAGCGTGTCATGGCTCAATGGCTAGTTCAGAGCAAAAGTTAATATTTGAGGAGCCTGAATATGGAGTGAGAAAAATAGTGCTAGCAACAAATATTGCTGAAACGAGTATCACCATAAATGATGTTGTTTTTGTTCTGGACTGTGGAAAAGCAAAAGAAACGTCATATGATGCACTGAATAATACACCTTGTTTGCTTCCTACATGGATCTCTAAGGCTTCTGCTCGACAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCTGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGCCGAGTATCAATTGCCAGAAATTTTGAGAACACCTTTGCAGTCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCTGACTTCTTGTCTAGGGCTTTGCAGTCTCCTGAAATTCTCGCGGTACAAAACGCAGTTGAATATTTAAAAATAATTGGGGCTTTGGATGAGAATGAGAATTTGACTATTCTAGGACGCTATTTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGTGCTATCTTCAATTGCCTGGATCCCATATTAACTGTTGTTGCTGGCCTTAGCGTGAGAGATCCTTTTCTAACACCACTGGATAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTCTCTGGTGCATACAGTGACCACCTAGCGCTTGTACGTGCTTATGAGGGCTGGAAAGATGCTGAGGTAGACCTGGGTGGATATGACTATTGCTGGAAAAACTTTCTTTCATTTCAATCCATGAAAGCTATCGATGCTCTTCGGAGGGAGTTCATAGGCCTGCTTACGGATATTGGATTAGTTGATAGCAACACAACCAGCTATAATACATGGAGCTATGACGTAAATCTCATCCGGGGAATTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTGGTGCATAATGAGAAGTCATTCGCTTTGAAGACAATGGAGGATGGTCAAGTGCTCTTATATTTGAACTCGGTTAATGCTCGGGAAACTCAAATTCCATATCCATGGTTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTTCTACGTGACTCAACAGCTGTTTCTGATTCAATGGTGCTTCTGTTTGGTGGAAACTTATCAAAAGGAGATGCTGATAATCACTTAAAAATGTTGGGAGGATATCTGGAGTTTTTCATGGAGCCTACTGTTGTTGACATGTATCAGAGTATAAGGAGAGAACTTGATGACTTCATTCAGAGCAAACTACTTTCTCCAAGAATGAGCATACACTCATATCATAACCTCTTATCTGCGGTACGGTTGCTGATTTCCAATGACACATGTGAAGGAAGATTTGTATTTGGTCGCCAGGTCCTTAAATCATCAAAGACATCTGTGGTGGCCTCACACCCAGCATCATTGGTTTCAAGGACGGACAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACTTTGCTTACAAGAGCAGGATATGCTCCCCCCGTCTACAAGACTAAACAGTTGAAGAACAACCAGTTTCGGGCTACAGTTGAGTTCAATGGAATGCAGATTATGGGCCAACCTTGTAACAATAAGAAGAGTGCAGAGAAAGATGCTGCTGCTGAAGCATTGCAATGGTTGATGGGCAAGCAGTCAGGCTGTGAGTATGTCAATCACATGTCGATGCTTCTGAAAAAAAGTAAGAAGGATCACAATTAA 2496 0.4079 MSVSERVAFERGEKLGESVGYRVRLEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDFLLIILKDLLPHRPKLKLILMSATLDAELFSLYFNGAPIVNIPGLTHPVRTLFLENILEMTGYRLTPCNQVDDYGQERSWKMNKQAPRKRKSQIASAVEDAIRSADFKDYSLQTQESLSCWNPDCFGFNLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLQAHAVLGDSKRVLLLACHGSMASSEQKLIFEEPEYGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQSPEILAVQNAVEYLKIIGALDENENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFSGAYSDHLALVRAYEGWKDAEVDLGGYDYCWKNFLSFQSMKAIDALRREFIGLLTDIGLVDSNTTSYNTWSYDVNLIRGIICYGLYPGICSVVHNEKSFALKTMEDGQVLLYLNSVNARETQIPYPWLVFNEKIKVNSVFLRDSTAVSDSMVLLFGGNLSKGDADNHLKMLGGYLEFFMEPTVVDMYQSIRRELDDFIQSKLLSPRMSIHSYHNLLSAVRLLISNDTCEGRFVFGRQVLKSSKTSVVASHPASLVSRTDSGPGGDNSKSQLQTLLTRAGYAPPVYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGKQSGCEYVNHMSMLLKKSKKDHN 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01512 831 CDD DEXHc_RHA-like 1 114 - -
Car04g01512 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 496 IPR027417 -
Car04g01512 831 Pfam Helicase associated domain (HA2) 399 472 IPR007502 GO:0004386
Car04g01512 831 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 1 757 - -
Car04g01512 831 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 202 376 IPR001650 -
Car04g01512 831 SMART ha2_5 398 488 IPR007502 GO:0004386
Car04g01512 831 CDD SF2_C_RHA 185 344 - -
Car04g01512 831 Gene3D - 201 355 IPR027417 -
Car04g01512 831 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 554 635 IPR011709 -
Car04g01512 831 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 115 IPR014001 -
Car04g01512 831 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 743 808 IPR014720 -
Car04g01512 831 Gene3D - 378 482 - -
Car04g01512 831 Pfam Helicase conserved C-terminal domain 204 335 IPR001650 -
Car04g01512 831 SUPERFAMILY dsRNA-binding domain-like 735 806 - -
Car04g01512 831 SMART DRBM_3 744 807 IPR014720 -
Car04g01512 831 Gene3D - 1 117 IPR027417 -
Car04g01512 831 SMART helicmild6 230 336 IPR001650 -
Car04g01512 831 MobiDBLite consensus disorder prediction 727 746 - -
Car04g01512 831 Pfam Double-stranded RNA binding motif 744 806 IPR014720 -
Car04g01512 831 PANTHER ATP-DEPENDENT RNA HELICASE 1 757 - -
Car04g01512 831 Gene3D - 719 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01512 Car-Chr4 15308892 15320225 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01512 04 15308892 15320225 Car04g01512 04 15308892 15320225 ECH