Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01481 ATGGCACTCTCACGATCATTCACAAGATTCCCCGTTCTTGTTTCACTCTCAAAATCTTCTTTAACACTCTCACCAACTTCAAATTTTAACCAACATTATTATTCCACACCCACCATTCAACTAATCCAAAACCCATATGGCTCTCTCAAATTACACTTTTTCACATTTCACACATCGCGTGTTATTAAACCCAACAACACCAACCCACATGCCGAAACAATCTGCAAAATCTTATCCACCACACCCGATTCAACCCTCGACGCCTCTCTCGCCAACCTTTCGGTGGAGATTTCACATGACCTGGTGGTTGATGTCTTAAACAGGCTCAGCAATGCCGGAATTCTCGCTCTTTCGTTCTTCCGTTGGGCAGAGAAACAAAAGGGGTTCAACCACACCACAGAGAGTTTCCATGTTTTGATTGAAGCACTTGGTAAGATCAAACAGTTCAAGATGATTTGGAATTTGGTGGATGAAATGAAAAAACGAAACTTGCTTAATGGCGACACTTTTTCCCTCATTGCTCGTAGATATGTTAGAGCTAGAATCGTTAAGGAAGCATTGAAAACGTTTGAGAGGATGGAAAAATACGGATTGAAGCCTCAAATAACTGATTTCAATAAGTTAATTGATGTTTTGTGTAAGTCAAAGTTACATGTTGAGAAAGCTCAAGAACTGTTTGATAAAATGCGGCAGTGGAATTTAGAGCCTAATCTCAAGTCCTACACTATTTTATTAAAATGA 741 0.3954 MALSRSFTRFPVLVSLSKSSLTLSPTSNFNQHYYSTPTIQLIQNPYGSLKLHFFTFHTSRVIKPNNTNPHAETICKILSTTPDSTLDASLANLSVEISHDLVVDVLNRLSNAGILALSFFRWAEKQKGFNHTTESFHVLIEALGKIKQFKMIWNLVDEMKKRNLLNGDTFSLIARRYVRARIVKEALKTFERMEKYGLKPQITDFNKLIDVLCKSKLHVEKAQELFDKMRQWNLEPNLKSYTILLK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01481 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Car04g01481 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 236 IPR002885 -
Car04g01481 246 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 68 245 - -
Car04g01481 246 TIGRFAM PPR: pentatricopeptide repeat domain 169 200 IPR002885 -
Car04g01481 246 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Car04g01481 246 Pfam PPR repeat 135 163 IPR002885 -
Car04g01481 246 Pfam PPR repeat 169 198 IPR002885 -
Car04g01481 246 Gene3D Tetratricopeptide repeat domain 100 246 IPR011990 GO:0005515
Car04g01481 246 Pfam PPR repeat family 205 246 IPR002885 -
Car04g01481 246 PANTHER OS01G0505500 PROTEIN 68 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01481 Car-Chr4 15026118 15026858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01481 127 245 Glycosyltransferase AT1G05670 23.333 2.71e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01481 04 15026118 15026858 Car04g01481 04 15026118 15026858 ECH