Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01475 ATGGGTCTCTTTCATAGATCGCACCTTTCCCTCGCCTTCATTCTTTCTCTCTCATTTTTGTCTCTTTCCTTTTCCCTCGACATGTCCATCATCGACTACGATGCTAAACTCGAGGCTGCCAAAACCGACATTCACCTCATGAAAATCTACGAATCGTGGTTGCTGAAACATGGGAAAGTTTACAATGCCTTGGGTGAGAAAGAACATAGATTTGAAATCTTTAAGGATAACCTGCAATTCATCCAAAACCATAATAACATGGAAAACCAAAGCTTTAAGTTGGGTCTTACAAAGTTCGCTGATCTTACCAATGAGGAGTATCGTTCCATGTTTTTGGGTACACGGAGTCGTAATTCCAAAGGGTTGCTTTCTGGCTCTAAGAAGAGTAATCGTTATGCTTTTCATGATACCGATGAATTGCCAGGTTCCGTTGATTGGAGGGAGAAAGGTGCTGTTACTCCTGTCAAAGATCAAGGCCAATGTGGGAGTTGTTGGGCATTCTCAACAGTTGGTGCTGTGGAAGGTATCAATCAAATTGTAACTGGGGATCTCATATCTCTATCAGAGCAAGAGTTGGTTGATTGTGACAAAGGTTTTAACATGGGATGCAATGGAGGTCTCATGGACCATGCTTTTGAATTTATAATGAAAAATGGTGGCATTGATACTGAAGAGGATTACCCTTATCGTGCTCGCGATAATACATGTGATTCAAACAAGAAAAATGCCCGGGTAGTCACCATTGATGGATATGAAGATGTTCCTGAAAACGATGAGAAGTCATTGATGAAGGCTGTTGCAAATCAACCCGTTAGCGTTGCCATTGAAGCTGGTGGCAGGGCATTTCAACTTTACCATTCAGGTGTTTTTACTGGCCTATGCGGAACAGAACTTGACCATGGTGTTGTGGCAGTTGGATATGGAACAGAGAACGGTACCGATTATTGGCTAGTGAGAAACTCATGGGGTCCATCATGGGGTGAGAATGGTTATATTAAGCTAGAGAGGAATTTGCTAACAAGCAAAACCGGTAAATGCGGTATTGCAATGGAGGCATCATATCCTATCAAGAAGGGTCAGAACCCTCCAAATCCTGGTCCTACCCCTCCATCACCTGTAAAACCTTCAACTGTATGTGATGATTACTACTCTTGCTCAGCTGGAACCACATGTTGTTGTCTTTTTGAGTATGGAAGCTATTGCTTTGCATGGGGATGTTGTCCCGTTGAGTCTGCAACTTGTTGCGACGACGGTTCCAGTTGTTGTCCTCCTGATTACCCCATCTGCGATGTTCACGCCGGAACATGCCGATTGAGCAAAGACAATCCATTTGGAGTGAAAGCTTTGAGAAGGACACCTGCTACAACTACTTGGAGTTGGACACAGCGAAAAGCCGCAACGAAAGACAACTCCGAGTGA 1419 0.4369 MGLFHRSHLSLAFILSLSFLSLSFSLDMSIIDYDAKLEAAKTDIHLMKIYESWLLKHGKVYNALGEKEHRFEIFKDNLQFIQNHNNMENQSFKLGLTKFADLTNEEYRSMFLGTRSRNSKGLLSGSKKSNRYAFHDTDELPGSVDWREKGAVTPVKDQGQCGSCWAFSTVGAVEGINQIVTGDLISLSEQELVDCDKGFNMGCNGGLMDHAFEFIMKNGGIDTEEDYPYRARDNTCDSNKKNARVVTIDGYEDVPENDEKSLMKAVANQPVSVAIEAGGRAFQLYHSGVFTGLCGTELDHGVVAVGYGTENGTDYWLVRNSWGPSWGENGYIKLERNLLTSKTGKCGIAMEASYPIKKGQNPPNPGPTPPSPVKPSTVCDDYYSCSAGTTCCCLFEYGSYCFAWGCCPVESATCCDDGSSCCPPDYPICDVHAGTCRLSKDNPFGVKALRRTPATTTWSWTQRKAATKDNSE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01475 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Car04g01475 472 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 32 386 - -
Car04g01475 472 CDD Peptidase_C1A 141 355 IPR039417 -
Car04g01475 472 Gene3D Granulin 376 438 IPR037277 -
Car04g01475 472 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Car04g01475 472 SMART Inhibitor_I29_2 50 107 IPR013201 -
Car04g01475 472 Pfam Cathepsin propeptide inhibitor domain (I29) 50 107 IPR013201 -
Car04g01475 472 SMART GRAN_2 379 436 IPR000118 -
Car04g01475 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Car04g01475 472 SUPERFAMILY Granulin repeat 377 410 - -
Car04g01475 472 SUPERFAMILY Cysteine proteinases 42 356 IPR038765 -
Car04g01475 472 Gene3D Cysteine proteinases 28 358 - -
Car04g01475 472 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Car04g01475 472 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Car04g01475 472 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Car04g01475 472 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Car04g01475 472 Pfam Granulin 390 436 IPR000118 -
Car04g01475 472 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
Car04g01475 472 PANTHER CYSTEINE PROTEASE 32 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01475 Car-Chr4 14974750 14977364 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01475 04 14974750 14977364 Car04g01475 04 14974750 14977364 ECH
Car04g03413 04 62780254 62784555 Car04g01475 04 14974750 14977364 ECH