Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01423 ATGGCTTTAGAGTTAGAAGCTTTCAATTCTTCTCCTCCCACTAATAGTCCCTTCCCAACCTTCAACAAGGAAGAGATTCGTGAGAGTGAGTCTTTGGTTAAAAGAAAACGCTCAAAACGACCTCGTATTAGTAATCCACCAACTGAAGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCAAAGCGGTAACAACAGAAACAACAAAAACGACATCGTTTCTCACTTTCACAACCAAATTGAATCTTCATCTTCGCAATCACAACAACAACCATCACCACCATCGCCGCCGGTGAAGCTGAATCACCGCTGCACTGTCTGCAACAAGGCTTTCCCCTCTTATCAGGCACTTGGTGGTCATAAAGCCAGTCACCGTAAATCCTCTTTGGAAACTCCATCCACAGCCTTCAACGACACTGTATCCGTCTCAACCGTCACCGCCGGTAAGATGCACGAGTGTTCAATCTGTCATAAGAGTTTTTCTACCGGTCAAGCACTTGGTGGACACAAACGATGCCACTACGAAGGAGGTATCAATCacaacaacaacaataacaataacagtaatagcaacgtcaacgctaataacagcaGTGGAATCACAATATCTGAGGGCGCCGCCGCTTCCTCCTCCGTCAGCCACCGTGGATTTGACCTCAATCTACCTGCGCCTCTAACTGAGTTCTGGTCTCCGGTGGGATTCGGAGGTGGCGATTCCAAGAAGAAGAGCGTTAACGTTAACGTCGCCGGAATCGGTGAACAGGAGGTGGAAAGCCCATTGCCGGTAACCGCCAAAAGGCCACGTGTGTTTTTGGTTGAACATGATGATGAAACGGTGTAG 843 0.4543 MALELEAFNSSPPTNSPFPTFNKEEIRESESLVKRKRSKRPRISNPPTEEEYLALCLIMLAQSGNNRNNKNDIVSHFHNQIESSSSQSQQQPSPPSPPVKLNHRCTVCNKAFPSYQALGGHKASHRKSSLETPSTAFNDTVSVSTVTAGKMHECSICHKSFSTGQALGGHKRCHYEGGINHNNNNNNNSNSNVNANNSSGITISEGAAASSSVSHRGFDLNLPAPLTEFWSPVGFGGGDSKKKSVNVNVAGIGEQEVESPLPVTAKRPRVFLVEHDDETV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01423 280 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 20 272 - -
Car04g01423 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Car04g01423 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 174 IPR013087 -
Car04g01423 280 SMART c2h2final6 152 174 IPR013087 -
Car04g01423 280 SMART c2h2final6 103 125 IPR013087 -
Car04g01423 280 MobiDBLite consensus disorder prediction 8 22 - -
Car04g01423 280 SUPERFAMILY beta-beta-alpha zinc fingers 103 174 IPR036236 -
Car04g01423 280 Pfam C2H2-type zinc finger 103 127 - -
Car04g01423 280 Pfam C2H2-type zinc finger 152 175 - -
Car04g01423 280 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Car04g01423 280 MobiDBLite consensus disorder prediction 1 46 - -
Car04g01423 280 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 20 272 IPR044653 GO:0003700
Car04g01423 280 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Car04g01423 280 MobiDBLite consensus disorder prediction 80 102 - -
Car04g01423 280 Gene3D Classic Zinc Finger 101 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01423 Car-Chr4 14488323 14489714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01423 3 270 C2H2 Transcription Factor Family AT1G27730 42.553 4.20e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01423 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01423 04 14488323 14489714 Car04g01423 04 14488323 14489714 ECH
Car04g03391 04 62470336 62472048 Car04g01423 04 14488323 14489714 ECH
Car05g02787 05 72935950 72937073 Car04g01423 04 14488323 14489714 ECH