Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00250 ATGGGAAGAGGTAGGGTTCAACTGAAACGGATCGAAAACAAAACAAGTCAACAAGTGACATTTTTCAAAAGAAGAACTGGACTTCTCAAAAAAGCTAATGAAATTTCTGTGCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTTTTCCTCAGCACCAAGCATGGAAGATATCCTGGAACGATATGAGAGACAAAACCATACAGAGCTTACTGGAGCTAACACTGAAGCACAGGGAAACTGGTCTTATGAATACATGAAGCTAACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTGAGGAACTTTGTGGGACATGATCTTGATCCTTTGAGTGTGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGACATGTCGCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAACCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGGCATTGCAGGATCAAAACAGCAAGCTAGCAAAGACAAAGGAGAAAGAGAAAACAGTGAGTGAACATCCACAGAGATTCCCAGAAACCATAGGCATAGGACAATGTTCAGCCACCTTCAACTTAACTTGTCAACCTGATCTGCTACCACCACAAAGACTGGTTCCTTCTCTAACTCTCAGTGGAACTTTACAAGCAAGAGGGTCATTGGAATTTGAAGAAAGGGGTGAAGTTCAGATTGTCCCTAGCAACAACACTAGTCTCATTCCAGCATGGATGCTGCAACATCTCACTAACTAG 768 0.4193 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEFSSAPSMEDILERYERQNHTELTGANTEAQGNWSYEYMKLTAKVQVLERNLRNFVGHDLDPLSVKELQSLEQQLDMSLKRIRTRKNQVMNQSISELHKRARALQDQNSKLAKTKEKEKTVSEHPQRFPETIGIGQCSATFNLTCQPDLLPPQRLVPSLTLSGTLQARGSLEFEERGEVQIVPSNNTSLIPAWMLQHLTN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00250 255 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00250 255 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Car03g00250 255 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Car03g00250 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00250 255 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Car03g00250 255 PANTHER MADS BOX PROTEIN 1 225 - -
Car03g00250 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 Coils Coil 123 169 - -
Car03g00250 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car03g00250 255 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00250 Car-Chr3 6047954 6054421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00250 1 176 MADS-box Gene Family AT1G26310 57.459 8.29e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car03g00250 K-box 1.5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00250 03 6047954 6054421 Car07g00873 07 7741718 7747057 ECH
Car03g00250 03 6047954 6054421 Car03g00250 03 6047954 6054421 ECH
Car02g00279 02 2858834 2864145 Car03g00250 03 6047954 6054421 ECH
Car02g00869 02 13202133 13206193 Car03g00250 03 6047954 6054421 ECH