Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00249 ATGGGAAGAGGAAGAGTAGAATTGAAGAGGATAGAGAACAAAATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTTTATGAATTTTGTAGCACTTCTAACATGCTCAAAACTCTTGATAGGTACCAGAAATGTAGTTATGGTGCTGTGGAAGTTAGCAAACCTGCCAAGGAACTTGAGAGCAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAAGACCCAGAGAAATCTTTTAGGGGAAGACTTGGGCCCACTGAATTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTAGATTCATCTCTGAAGCAAGTTAGATCCACAAAGACACAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAACATATGTTGGTAGAAGCAAACAGATCCTTGTCAATCAAGTTGGATGAAATCAATTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGCATGCAATATGGTGGTCCACAAAATGCTCATTCTCAGAGCTTCTTCCAGCAGCTGGAATGCAATCCCACATTACAGATTGGTCCTGATTATAGGTACAACAATGTAACTTCAGATCAGATAGCTTCAACAAGTCAAGCACAACAACAAGTGAATGGCTTTGTTCCTGGATGGATGCTTTAA 750 0.3867 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQKTQRNLLGEDLGPLNSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSIKLDEINSRNHYRQSWEAGDQSMQYGGPQNAHSQSFFQQLECNPTLQIGPDYRYNNVTSDQIASTSQAQQQVNGFVPGWML 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00249 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00249 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 232 - -
Car03g00249 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Car03g00249 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Car03g00249 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g00249 249 Coils Coil 84 107 - -
Car03g00249 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Car03g00249 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 Coils Coil 124 144 - -
Car03g00249 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car03g00249 249 PANTHER MADS BOX PROTEIN 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00249 Car-Chr3 5991166 5996406 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car03g00249 K-box 6.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00249 03 5991166 5996406 Car07g00874 07 7761994 7767195 ECH
Car03g00249 03 5991166 5996406 Car03g00249 03 5991166 5996406 ECH
Car02g00868 02 13164427 13188586 Car03g00249 03 5991166 5996406 ECH
Car02g00279 02 2858834 2864145 Car03g00249 03 5991166 5996406 PCT