Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00062 ATGCGTATGAGTTGTAACGGTTGTCGTGTACTAAGAAAAGGTTGTAGTGAAAATTGTAGCATAAGACCTTGTTTGCAATGGATCAAAAGCCCTGAATCACAAGCTAATGCTACCGTGTTTCTCGCCAAATTCTACGGCCGTGCCGGTCTCATGAACCTTGTCAACGCTGGTCCTGAACATCTTCGTCCAGCGATTTTTCGTTCATTGTTGTACGAAGCATGTGGTCGAATAGTGAACCCGATTTACGGTTCAGTTGGTTTATTATGGTCTGGGAGCTGGCAACTTTGTCAAGCCGCTGTGGAAGCCGTTTTGAAAGGCGCGCCGATTACGCCAATAACTTCGGAAGCAGCTGCTAATGGGCGGGGTCCACCTCTCAAGGCGTATGACATACGCCACGTGTCGAAAGAAGAGAACTCCGCCGTTTCGAACGAAACTCAGCAGCGAGTCAAGACTCGGTCTCGTGTGAAGCGATCGAACTTAGCCAAGCCGAAGTTAACAACTGATAATGAGGAAAAAAGTAGCAATAACAAAGGAATTGAATCCGGTTCTGTTGAACCGGTTGAAGAAGTGATGAACCGGTCCGCGAGTCATGAATCATCGCTAAGCCACCAGTCTGAGGCGGTAAATGCGGCGGCGGTGGATGGAGAGAGTAAAGAGAGTGATGAAAGTATGGCTTCGGTTGAAACGGCTGAGACTTCGATGAACTTATTTAGAGATGAACCGGAGTCAACCAGAGATTTGAAACGGGTGGACCGAACCGGTGAAAGTGGAGAGGAAAATGTTGGTTTAGAATTGACTCTTGGGTTTGAACCGGTTTCACGTGTTCATCACGTGGTTCCTGTGAAGAAAAGAAGAGTTGAATTGAAAGATTGTGGTGGCGGCTCATGGAAGATTGAGCTGGGGCTTCCATAA 912 0.4748 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKEENSAVSNETQQRVKTRSRVKRSNLAKPKLTTDNEEKSSNNKGIESGSVEPVEEVMNRSASHESSLSHQSEAVNAAAVDGESKESDESMASVETAETSMNLFRDEPESTRDLKRVDRTGESGEENVGLELTLGFEPVSRVHHVVPVKKRRVELKDCGGGSWKIELGLP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00062 303 MobiDBLite consensus disorder prediction 161 175 - -
Car03g00062 303 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Car03g00062 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 287 - -
Car03g00062 303 MobiDBLite consensus disorder prediction 134 224 - -
Car03g00062 303 PIRSF AS2 1 295 IPR017414 -
Car03g00062 303 MobiDBLite consensus disorder prediction 193 207 - -
Car03g00062 303 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Car03g00062 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00062 Car-Chr3 1539217 1542205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00062 1 286 AS2 family AT3G02550 56.250 5.05e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car03g00062 LOB 1.6e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00062 03 1539217 1542205 Car03g00062 03 1539217 1542205 ECH
Car02g00371 02 4131885 4133565 Car03g00062 03 1539217 1542205 ECH
Car04g01568 04 16130874 16131946 Car03g00062 03 1539217 1542205 ECH