Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01116 ATGATGATCATGAAGTACTTATCTCCAATTTACAATAATCTAAAATTTGTATTAGATTTTCTTGTATACCATCCCTTCCATAATTCTCAGTTTCCATTAACTGGAGAAGATTACTACAATATATGCAATTATGAACCAACCCCTATGTCAGAGGAAGATGTAGATTGTGTTGTGTGTCTCTGCAAAATAAAAGAGGGAGAAGAGATTAGAGTATTGAGATGTGAACATATGTATCACAGAAATTGTTTGGATAAATGGATTAGTTTCAAGAAAGATACTTGTCCTCTTTGCAGAGAATCATTGAGACCAAGAAGGGCCACCACTGAGCTTGGAGCTGAAGTTCTATTATTTAATTATTGTGCCATCCGTACAAATAGAGATCGTGATGATTGGTGGCTACGTTGA 405 0.3506 MMIMKYLSPIYNNLKFVLDFLVYHPFHNSQFPLTGEDYYNICNYEPTPMSEEDVDCVVCLCKIKEGEEIRVLRCEHMYHRNCLDKWISFKKDTCPLCRESLRPRRATTELGAEVLLFNYCAIRTNRDRDDWWLR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01116 134 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Car02g01116 134 SUPERFAMILY RING/U-box 50 107 - -
Car02g01116 134 Pfam Ring finger domain 55 98 IPR001841 -
Car02g01116 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 105 IPR013083 -
Car02g01116 134 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 126 - -
Car02g01116 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 4 126 - -
Car02g01116 134 SMART ring_2 56 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01116 Car-Chr2 31520298 31520756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01116 55 101 C3H Transcription Factor Family AT1G15100 57.447 9.44e-15 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01116 02 31520298 31520756 Car02g01116 02 31520298 31520756 ECH