Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00972 ATGCAAAGTCACTCACTCTCCTACATATCATCATATGAGACTGTTGATGAGTCCTCCATTTCACTCTCTCTTGGCCCTCCTGGTACACACCACAAACCCAAACTATCCTCTTCAACATCAAATCATCATTCTGCTACCACTCTGCATCACCATCTTCATCAACACCAAAAGCAAAATCTTACCATTGATGATGATCAGAGTGGTGTAACAGTTGCACTTCACATTGGCCTTCCGACCACTAATATTTCACAAAACAATATCCCCATTAACAAACCTGATCCGATACAAGGTCAATATTGGATTCCTTCGCCTGCTCAAATACTCATTGGACCAACACAGTTCTCTTGCACTGTTTGTAATAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGCTTCGGCTTCCTTGCTATTGCTGTGCCGAGGGATGCAAAAACAACATAGAACATCCTAGGTCAAGGCCACTAAAGGATTTCAGAACACTTCAAACACACTACAAGAGAAAGCATGGAGCCAAGCCATTCGGTTGTAGAAAGTGTGGAAAACCCTTTGCCGTTAGAGGAGATTGGAGAACACACGAGAAAAACTGTGGAAAACTTTGGTTCTGTATCTGTGGCTCTGATTTCAAACACAAGAGATCACTAAAAGATCATGTTCGTGCTTTTGGTGATGGTCATGCTCCACACACTGTGGAGAGTTGtgaagatcaagatgtgttgttaggtgatgagtatgatgaggaatttgaactagacgaagatgatgaagattatgatgatgataatgatAACATCAATGGAATGGCTTTTAGTTTTCGTTCATAA 897 0.3768 MQSHSLSYISSYETVDESSISLSLGPPGTHHKPKLSSSTSNHHSATTLHHHLHQHQKQNLTIDDDQSGVTVALHIGLPTTNISQNNIPINKPDPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQDVLLGDEYDEEFELDEDDEDYDDDNDNINGMAFSFRS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00972 298 MobiDBLite consensus disorder prediction 19 58 - -
Car02g00972 298 SUPERFAMILY beta-beta-alpha zinc fingers 110 135 IPR036236 -
Car02g00972 298 Gene3D Classic Zinc Finger 156 246 - -
Car02g00972 298 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Car02g00972 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Car02g00972 298 PANTHER ZINC FINGER PROTEIN WIP2 8 290 IPR043584 GO:0003700|GO:0010468
Car02g00972 298 SUPERFAMILY beta-beta-alpha zinc fingers 182 219 IPR036236 -
Car02g00972 298 PANTHER ZINC FINGER PROTEIN WIP6 8 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00972 Car-Chr2 17167621 17169611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00972 16 266 C2H2 Transcription Factor Family AT1G13290 67.829 5.08e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g00972 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00972 02 17167621 17169611 Car02g00972 02 17167621 17169611 ECH