Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00964 ATGAAAAAGGAAGAAGATCAAGGACAGTGTTCTTCTCAAAACATTAAAACCTATGAAGAACAAGTATTCCTCCAGCAACAAAACAGTAATCATATGAATATGTTTGGAAGAGGAAAAAGGTTGATGTTCCCTGAAGTTTCTCCAATCTTGCAAACACAACCATTATTTCTTGTCCCTCCTACAACACCTTCTTCATTATTACCTTACACAAGCTTTTTCAATTCAAGGGTTCCAATTCCATCTTCTTCTCATACCTTTGTGGGAAATCCATATGGATTGATCCAACCTGAGTATGGTAGTAAAATTAGTGCTCAAGAAATGATGGAAGCTAAAGCTGTTGCTGCTTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAACAACCATCTTGCTAAACTTCGAACCTTGTTGCCTAACACAACCAAAACAGATAAGGCTTCGTTGCTGGGTGAAGTGATTGAACATGTGAAGTTACTGAAACGTCAAACATCGTTGATAGCAGAAACAAGTGAAGTGCCCACTGAGTCTGATGAGTTAATTGTGAACGGTGGCGATGACCAGAATGGTAAGTTTATGATCAAAGCCTCTTTATGTTGTGAAGATAGATCTGATCTTTTACCCGATCTCATCAACACTTTAAAATCTTTACGGCTTCGAACCCTCAAAGCCGAGATTACCACGCTCTCTGGGCGCGTCAAGAACGTCTTGTTCGTTACTGAAAGTGAAGATAGTGATTATTCAAATGGAGAGGAACAGCAGTATGCATGTATTAACTCAATACAAGAAGCGCTTAAGGCAGTGATGGAAAAGAGTACGGATGAATCTATTTCTGGAAATGTTAAGCGCCAAAGGACTAATAATATTATTCAATATGAAAATTAA 894 0.3859 MKKEEDQGQCSSQNIKTYEEQVFLQQQNSNHMNMFGRGKRLMFPEVSPILQTQPLFLVPPTTPSSLLPYTSFFNSRVPIPSSSHTFVGNPYGLIQPEYGSKISAQEMMEAKAVAASKSHSEAERRRRERINNHLAKLRTLLPNTTKTDKASLLGEVIEHVKLLKRQTSLIAETSEVPTESDELIVNGGDDQNGKFMIKASLCCEDRSDLLPDLINTLKSLRLRTLKAEITTLSGRVKNVLFVTESEDSDYSNGEEQQYACINSIQEALKAVMEKSTDESISGNVKRQRTNNIIQYEN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00964 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 172 IPR036638 GO:0046983
Car02g00964 297 SMART finulus 120 169 IPR011598 GO:0046983
Car02g00964 297 CDD bHLH_AtAIG1_like 109 186 - -
Car02g00964 297 Pfam Helix-loop-helix DNA-binding domain 117 163 IPR011598 GO:0046983
Car02g00964 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Car02g00964 297 CDD ACT_UUR-ACR-like 200 272 - -
Car02g00964 297 PANTHER TRANSCRIPTION FACTOR BHLH30 93 293 - -
Car02g00964 297 Gene3D - 108 170 IPR036638 GO:0046983
Car02g00964 297 PANTHER TRANSCRIPTION FACTOR BHLH30 93 293 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00964 Car-Chr2 16668256 16672285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00964 89 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 68.780 4.65e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00964 HLH 1.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00964 02 16668256 16672285 Car02g00964 02 16668256 16672285 ECH