Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00869 ATGGGAAGGAGTAAGGTGCAGCTAAAACGGATCGAGAACAAGATCAATCGTCAAGTCACTTTCTCAAAAAGGAGAACCGGTTTGCTTAAGAAAGCTAATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTCTTCTCCCATAATGGAAAGCTCTTTGAGTATTCAACTGATTCTTGCATGGAGAAGATTCTGGAACGCCATGAAAGGTATGGCTATGCAGAGAGACTACTAGTAACAAATGATTCGGAGACTCAGGAAAACTGGAGCATTGAATATACTAGACTGAAGGCAAAGATTGATCTTTTGCAGCGAAACCACAGACAATATTTGGGAGAAGATTTAGCTTCAATGAGTCTCAAAGAGCTTCAATGTTTAGAGCAACAGTTAGATACTGGTCTCAAGAGCATCCGTACCCGCAGAAATCAAGTCTTATATGAGGCCATTTCTGAGCTTCAGAAAAAGGAGAAAGGGATACAAGAGCAGAATAACATGCTCACAAAGGAGATAAAGGAGAAGGAGAAGGCTGTAGCACAGGAGGCTGCTGCTCAATGGGATCAACCAAACTATAGGGTTGATACATCTTTCTTACTACAAGACCCACTTCCTGTTTTGAATATGGGTGGCAATTACCGTGAGGGAGCACAAGAACTGGGGAGGAACGAGCTTGACCTGACACTTGAACCACAATATTATTATAATTCTTAA 714 0.4132 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHNGKLFEYSTDSCMEKILERHERYGYAERLLVTNDSETQENWSIEYTRLKAKIDLLQRNHRQYLGEDLASMSLKELQCLEQQLDTGLKSIRTRRNQVLYEAISELQKKEKGIQEQNNMLTKEIKEKEKAVAQEAAAQWDQPNYRVDTSFLLQDPLPVLNMGGNYREGAQELGRNELDLTLEPQYYYNS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00869 237 Coils Coil 88 115 - -
Car02g00869 237 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Car02g00869 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00869 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Car02g00869 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 - -
Car02g00869 237 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00869 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g00869 237 Coils Coil 151 185 - -
Car02g00869 237 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Car02g00869 237 PANTHER MADS BOX PROTEIN 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00869 Car-Chr2 13202133 13206193 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g00869 K-box 1.5e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00869 02 13202133 13206193 Car02g00869 02 13202133 13206193 ECH
Car02g00869 02 13202133 13206193 Car02g00279 02 2858834 2864145 ECH
Car02g00869 02 13202133 13206193 Car03g00250 03 6047954 6054421 ECH