Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00868 atgggtaggggaaaggtagagctgaagaggattgagaataaaataaatcgtcaagtaacatttgcaaagagaagaaatgggttgctcaagaaagcttatgaactctctgtcctttgtgatgctgaggttgctcttattattttctccaaccgtggaaagctctatgagttctgcagtggttctagTATGGCCAAGACACTTGAACGCTATCAAAGAAGTAGTTATGGAGCCTTGGAAGTACACCACCCACAAGAACATGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTAAAATCAAAAGTTGAGACACTACAGCAAACACAGAGAAACATTCTTGGGGAAAAGTTGGAGCACTTAGATATTAACGAGCTTGAGCAGCTAGAAAGTCAGTTAGATTCTTCTTTGCGACAAATCAGGTGGAAGAAGACACAACAAATGCTTGATCAACTATCGGATTTGCAAAGAAAGGAAGAGATGCTACTGGAAACTAATAATATCCTGAGGAACAAGTTGGAAGAGATTAATGTGGCCCTTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCACTACAGTTGCCACCCTCCTCAATCAGAGGAATACTATGAGAAAGCACATAGCAATACATTGCAAATTGGCTGCAATTCTTCAGGGTTAAATGAATCGAGAGAAGTTATAGGATCCTCAGCTCATAATGTCAGTGACTTCATGCATGGATGGATGACCTAA 732 0.3087 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMAKTLERYQRSSYGALEVHHPQEHETQRRYQEYLKLKSKVETLQQTQRNILGEKLEHLDINELEQLESQLDSSLRQIRWKKTQQMLDQLSDLQRKEEMLLETNNILRNKLEEINVALQPTWEAREQNAHYSCHPPQSEEYYEKAHSNTLQIGCNSSGLNESREVIGSSAHNVSDFMHGWMT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00868 243 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Car02g00868 243 Coils Coil 151 174 - -
Car02g00868 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Car02g00868 243 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Car02g00868 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 229 - -
Car02g00868 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00868 243 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00868 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g00868 243 PANTHER MADS BOX PROTEIN 1 229 - -
Car02g00868 243 Coils Coil 125 145 - -
Car02g00868 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00868 Car-Chr2 13164427 13188586 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g00868 K-box 6.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00868 02 13164427 13188586 Car02g00868 02 13164427 13188586 ECH
Car02g00868 02 13164427 13188586 Car03g00249 03 5991166 5996406 ECH