Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00803 ATGACAACACTTTACATGCCATTGTTCAGATCATGTTCTACCTTAAGACAACTCACTCAACTCCATGCCCACCTTGTTGTCACCAACCTTCACAATGACCCACTTCCCTCTACAAAGCTTCTTGAATCCTATGCCCAAATGGGTTCTCTCCAATCATCAAGACTTGTTTTTTATTCATACCCATCTCCTGATTCCTTCATGTTTGGTGTTCTCATCAAGTGTTACCTTTGGAATCACTTTTTTGATCAAGTTGTTTCTCTTTACAATCATCATTTTCATACGGGTTCTCACTTTACTCAGAATTGTAGGTTTATCTATCCTTCTGTTTTGAAGGCTGCTTCTGCTGTTGGTGATTTGGTTTTGGGAAGAAAGTTGCATGGAAGGATAGTTAAATCTGGGTTTTGCAGTGATAGTGTTATTGGAACTTCGTTGCTTGCAATGTATGGGGAGTTGTGTTGTTTAAGTGATGCAAGGAAGGTGTTTGATGAAATGTTTCAAAGAGATTTGGTTTCTTGGAGTTCTATTGTTTCATGTTATGTTGAGAATGGGGTTCCAAGAGAAGGATTGGAAATGTTTCATTTGATGGTTTCTGAGGGAATTAGACCTGACTCGGTTACACTACTTAGCGTAGCCGAGGCTTGTGGTAAAATTGGTTGCTTAAGGTTGGCTGAATTGGTCCATGGATATGTGATCAGAGAAGGCATGGTTGGTGATGGCAGTTTGTGTAATTCTCTTATTGTTATGTACAGCCAGTGTGGTTACTTGTGTAAAGCAAAAAGGCTCTTTGAGTATCTCGATGATCGAAGTACTTCTTGTTGGACTTCTATGATTTCGTCGTATAATCAAAACGAGTGCTTTGAAGAGGCATTGGATGCTTTTATTCAGATGCAAGATTCAGAGGTAGAACCTAATGAAGTGACAATGATTAGTGTTCTGTATTCCTGTGCTAGATTAGGTTGGTTAAAAGAGGGAAAATCAGTTCATTGCTTTGTTCTAAGGAAAGCAATGGATGCTGCTGATCTTGATCTTGGGCCTGCACTTATAGATTTCTATGCAGCATGTTGGAAAACAACCAGTTGTGAAAAACTTCTTTATTCAATTCAAAATAGAAATGTTGTTTCGTGGAATACGCTTGTGTCATATTATGCTCGAGAAGGTTTCAACAAGGAAGCCATGGTACTCTTTGCACGTATGGTGGCAAAGGGCCTAATGCCAAATTCATTTAGCTTAGCAAGTTCTATTTCAGCTAGTGCGAGTGCAGGTTCGATACAATTTGGACAACAGATACATGGTCATGTCACGAAAAGAGGCTTCATGGATGAATTTGTTCAGAACTCTTTGGTGGACATGTATTCAAAATGTGGCTTTGTAGATTCGGCATACACAATTTTTAACATGATTAGGAAGAAAAGCATTGTGACATGGAATTGTATGATTTGCGGATTTTCTCAGAATGGTGTATCAGTAGAAGCACTCAGCCTCTTCGATGAGATGAATGTAAACCGCCTCGAGATAAACGAAGTAACCTTTTTAAGTGCAATTCAAGCTTGCTCCAATTTGGGTTACCTCGAGAAGGGAAAATGGATTCACCATAAGATTATTGTAACCGGTAATCAGAAGGATCTTTATATCGATACAGCTTTAGTAGACATGTATGCAAAGTGTGGAGACCTTCAAACAGCCCAAAGAGTTTTCGATACCATGCTAGAGAAAAATGTGGTGTCATGGAGTATCATGATCGCCGCTCACGGCATACATGGTCAAATAAATGCTGCAATCTCACTCTTCACTAAAATGGTTAACTCAAATATCAAACCAAATGAAGTAACCTTCATGAATATCTTATCTGCCTGCAGGCATGCCGGATCAGTGTCAGAAGGGAAATTTTATTTTAACTCTATGAAGGATTACGGCATAGTTCCCAATGCTGAACATTTTGCTTCCATAATCGACCTTCTAAGTCGCGCTGGCGATATCAATGGAGCATATGAAATAATTAAATCAATCCGTACGCCTGTAGATGCTAGCATATGGGGAGCTTTGCTTAACGGGTGTCGAATACACGGGAGGTTGGACTTGATTGAGAACATAAGTGAAGAACTTGGAGGAATAAGGACTGATGATACAGGGTACTATACTTTGTTATCTAACATATATGCTGAAGGAGGAAAGTGGTATGAATCAAGAAAAGTGAGATCAAGGATGGAAGGAATGGGACTGAAGAAGGTCCCTGGATACAGTACAATTGAGATTGATAGTAAAATCTATAGATTTGGAGCTGGAGATACTTCTGAATGGCAAATGAAAGAAATTTGCATGTTTTTAGAAAACTTTCAAAGCTTGGCCCAGGAACAAGGATGTGATGTAGAATGTTCTATGTATAATATTTCATCCGTTAGAAAATATAAGCAAAATTAA 2418 0.3888 MTTLYMPLFRSCSTLRQLTQLHAHLVVTNLHNDPLPSTKLLESYAQMGSLQSSRLVFYSYPSPDSFMFGVLIKCYLWNHFFDQVVSLYNHHFHTGSHFTQNCRFIYPSVLKAASAVGDLVLGRKLHGRIVKSGFCSDSVIGTSLLAMYGELCCLSDARKVFDEMFQRDLVSWSSIVSCYVENGVPREGLEMFHLMVSEGIRPDSVTLLSVAEACGKIGCLRLAELVHGYVIREGMVGDGSLCNSLIVMYSQCGYLCKAKRLFEYLDDRSTSCWTSMISSYNQNECFEEALDAFIQMQDSEVEPNEVTMISVLYSCARLGWLKEGKSVHCFVLRKAMDAADLDLGPALIDFYAACWKTTSCEKLLYSIQNRNVVSWNTLVSYYAREGFNKEAMVLFARMVAKGLMPNSFSLASSISASASAGSIQFGQQIHGHVTKRGFMDEFVQNSLVDMYSKCGFVDSAYTIFNMIRKKSIVTWNCMICGFSQNGVSVEALSLFDEMNVNRLEINEVTFLSAIQACSNLGYLEKGKWIHHKIIVTGNQKDLYIDTALVDMYAKCGDLQTAQRVFDTMLEKNVVSWSIMIAAHGIHGQINAAISLFTKMVNSNIKPNEVTFMNILSACRHAGSVSEGKFYFNSMKDYGIVPNAEHFASIIDLLSRAGDINGAYEIIKSIRTPVDASIWGALLNGCRIHGRLDLIENISEELGGIRTDDTGYYTLLSNIYAEGGKWYESRKVRSRMEGMGLKKVPGYSTIEIDSKIYRFGAGDTSEWQMKEICMFLENFQSLAQEQGCDVECSMYNISSVRKYKQN 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00803 805 Pfam PPR repeat 170 200 IPR002885 -
Car02g00803 805 Pfam PPR repeat 142 167 IPR002885 -
Car02g00803 805 Pfam PPR repeat family 470 518 IPR002885 -
Car02g00803 805 Pfam PPR repeat family 370 409 IPR002885 -
Car02g00803 805 Pfam PPR repeat family 269 316 IPR002885 -
Car02g00803 805 Pfam PPR repeat family 571 618 IPR002885 -
Car02g00803 805 Pfam E motif 698 750 IPR046848 -
Car02g00803 805 Coils Coil 803 805 - -
Car02g00803 805 Gene3D Tetratricopeptide repeat domain 222 340 IPR011990 GO:0005515
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Car02g00803 805 Gene3D Tetratricopeptide repeat domain 341 429 IPR011990 GO:0005515
Car02g00803 805 Gene3D Tetratricopeptide repeat domain 545 770 IPR011990 GO:0005515
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Car02g00803 805 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 402 777 - -
Car02g00803 805 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 277 - -
Car02g00803 805 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 273 406 - -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 609 643 IPR002885 -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Car02g00803 805 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Car02g00803 805 Gene3D Tetratricopeptide repeat domain 90 221 IPR011990 GO:0005515
Car02g00803 805 Gene3D Tetratricopeptide repeat domain 430 529 IPR011990 GO:0005515
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Car02g00803 805 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 273 406 - -
Car02g00803 805 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 402 777 - -
Car02g00803 805 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 277 - -
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Car02g00803 805 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00803 Car-Chr2 11473377 11475954 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00803 02 11473377 11475954 Car02g00803 02 11473377 11475954 ECH