Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00279 atgggaaggggaagagtggaattgaaaaggatagagaataagataaacagacaagttacatttgcaaagagaagaaatggacttttgaagaaagcttatgagttatcagttctttgtgatgctgaagttgctcttattatcttctccaacagaggcaagctttatgagttttgtagcAGTCCTAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGTAGCTATGGTGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGCAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGTGAAGACTTGGGTCCATTAGGTACCAAAGATCTTGAACAACTTGAACACCAACTTGATTCATCTCTCAAGCAAGTTAGGTCTACAAAGACCCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGGTTGATGCAAATAGATCTTTGAATATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTACTCAAAATCCTCACTCACAAAGCTTCTTCCAGCCTTTGGATTGCAATCCTACATTGCAGATAGGAAGTGATTACAGGTACAGTCCTGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAGGTCAATGGATTTATTCCTGGATGGATGCTTTGA 747 0.3146 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSMLKTLERYQKCSYGAVEVNKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLEHQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVDANRSLNMKLEEINSRNQYRQTWEAGDQSMAYGTQNPHSQSFFQPLDCNPTLQIGSDYRYSPVASDQLTATTQAQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00279 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00279 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 PANTHER MADS BOX PROTEIN 1 233 - -
Car02g00279 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 233 - -
Car02g00279 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Car02g00279 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Car02g00279 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g00279 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g00279 248 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Car02g00279 248 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00279 Car-Chr2 2858834 2864145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g00279 K-box 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00279 02 2858834 2864145 Car07g00873 07 7741718 7747057 ECH
Car02g00279 02 2858834 2864145 Car02g00279 02 2858834 2864145 ECH
Car02g00279 02 2858834 2864145 Car03g00250 03 6047954 6054421 ECH
Car02g00869 02 13202133 13206193 Car02g00279 02 2858834 2864145 ECH
Car02g00279 02 2858834 2864145 Car03g00249 03 5991166 5996406 PCT