Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00200 aTGTTGGAAGCTAGAGACCCAGCGATCAAGCTTTTCGGGAAGACGATTCCGGTGTCGGAGATCTCTCCTGGATCCGGTGACTCCACCGGTGCTCCGGCTTCATCTTCTTCCGGTGACGCTGTTGATGATGTTATTTGTCAGAACCATGTCTCTTCCAATACAGAAATGGATGGAGAAGAGCGAGAGATTGACGAGGAATCAAAGGAAGAGGAAGTGATTGAGTGTAATAAGGAAGATAAAACTATCACCCAATCATCAGAAAAGATAGCTGATCTAGACACTTCGTCAAGAGGGGAAGAATCTATTAAGCCTTCCAACGAAGAGGAGGAAAGCACACTGAAAACTGCAAAGAATAAAGAAGAACAGTCTGAGAATTCACAAGATAAGACGTTGAAAAAGCCAGACAAAATACTGCCTTGTCCTCGTTGTAATAGCATGGAAACAAAGTTCTGCTACTATAATAATTACAACGTCAATCAACCGCGTCATTTCTGCAAGAACTGCCAGAGATATTGGACTGCAGGCGGGGCTATGAGAAATGTGCCGGTAGGTGCTGGTCGCAGGAAGAACAAGAATTTTGCTTCTCATTATCGCCAGATAACTATCCCTGACGTAATAGTTCAGAATTCTCAATCTGACTCACCCAATGGAGTCCATCATCATTCTGTGAACTGTAATGGCACTGCCTTTACTTTTGGAACTGATACACCCTTGTGTGAGTCAATGGAATCTGTACTGAACATTGTTGATAAAGCAGTTACCAGTTGCCCAACAAATGGATTCAATAGACCAGAAGAACTAAGAATTTCTGTTCCCTATGCTGGTGAAGAAAAGAGCAATGATCATTCCAATAAATCTTCAGATGCATCAACAACGCCAACTGAAGATGCAACTACAAACAGTTCTCTAGAACAAGTTGTGCAGAACAGTCAAAGCTTCGCACCTCAATTTCCCCACTACCCGAGTGCCCCTTGGGTCTTGCCATGGAGTCCATCCCAATGGAGCTCTCAAGTACAATCACCACATGCTTTCTTCCCGCAAGGAATCGCCATGCCACTCTATCCTCCACCAGCTTATTGGGGTTTCACCATGCCTGGTGCATGGAACAATCCATGGCTAGCACAACCATCATCACCAAGTAGTGCAACCCCTAGCTCCCCAACTTTAGGTAAGCATTCAAGGGAAGAAAACACACTCACATCAAATGACGCAGTAGGTTCTGACGAACAAAGCAGCAAAGGAAACAATAAAGAAAAGTCTCTTTGGGTTCCAAAAACATTGAGGATTGATGACTTAGGAGAAGCACAAAAAAGCTCTATATTGACAACTCTTGGTATTAAAAACAGCAAGCCAGACTCAATATGTGGTGGAGGACTTTTCAAAGCATTCCAACCAAAGGGTGATGAAAAAGAAGACACACAAAACTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAATTAGCTTTCATGAGACCTCATAA 1491 0.4359 MLEARDPAIKLFGKTIPVSEISPGSGDSTGAPASSSSGDAVDDVICQNHVSSNTEMDGEEREIDEESKEEEVIECNKEDKTITQSSEKIADLDTSSRGEESIKPSNEEEESTLKTAKNKEEQSENSQDKTLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNFASHYRQITIPDVIVQNSQSDSPNGVHHHSVNCNGTAFTFGTDTPLCESMESVLNIVDKAVTSCPTNGFNRPEELRISVPYAGEEKSNDHSNKSSDASTTPTEDATTNSSLEQVVQNSQSFAPQFPHYPSAPWVLPWSPSQWSSQVQSPHAFFPQGIAMPLYPPPAYWGFTMPGAWNNPWLAQPSSPSSATPSSPTLGKHSREENTLTSNDAVGSDEQSSKGNNKEKSLWVPKTLRIDDLGEAQKSSILTTLGIKNSKPDSICGGGLFKAFQPKGDEKEDTQNSPVLQANPAALSRSISFHETS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00200 496 MobiDBLite consensus disorder prediction 1 136 - -
Car02g00200 496 Coils Coil 106 126 - -
Car02g00200 496 Coils Coil 56 76 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 21 53 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 274 302 - -
Car02g00200 496 Pfam Dof domain, zinc finger 135 192 IPR003851 GO:0003677|GO:0006355
Car02g00200 496 MobiDBLite consensus disorder prediction 474 496 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 285 302 - -
Car02g00200 496 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 495 - -
Car02g00200 496 PANTHER CYCLIC DOF FACTOR 2 1 495 IPR045174 GO:0003700|GO:0006355
Car02g00200 496 ProSiteProfiles Zinc finger Dof-type profile. 138 192 IPR003851 GO:0003677|GO:0006355
Car02g00200 496 MobiDBLite consensus disorder prediction 374 419 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 460 496 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 73 136 - -
Car02g00200 496 MobiDBLite consensus disorder prediction 58 72 - -
Car02g00200 496 ProSitePatterns Zinc finger Dof-type signature. 140 176 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00200 Car-Chr2 2033853 2037517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00200 6 496 C2C2-Dof Transcription Factor Family AT5G39660 42.286 3.41e-102 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car02g00200 zf-Dof 6.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00200 - - aprc:113862693 567