Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02575 ATGGTTTTCTCTTCTATTCCATCCTATTTAGATCCTCTCAATTGGCACCAACAACCAAATCCACATCAAGCAAATGGAAGTGATAGTCATCAATCTCATAACTTGCTTCCACATGGTGGAGGCTCAATGATTAGGCCTAGCTCGATAGCGaattcaaatcaagctcaggttcagactcagactcaagctcaacaacctaaaatacaacctcaaGAGACAACTTTAAAGTGTCCTCGTTGTGAATCAACAAACACTAAATTTTGTTACTACAACAACTACAACTTATCTCAACCAAGACACTTTTGTAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCATTAAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGGAGCAAGAAAACCAAAAAGAGtactacaactaatactactagctctaagactccattactatctaatagtaATGAAAAAGATTATTCACTTTCAAATTCAACTTCACTTGGTGAATTCCTACATCCAACTAATAATAGAACTTATTTGACTCCTCTTGGTGTTGGAAACATTGGTCAAATGGGGTTTCAAATTGGAGATTATAGTTCAAATATTGCTGTTGGAGAAGGTGGTGGAGGTTTGGATCAATGGAGGTTTCAACAATTTCCTTTCTTGAATGGTTTTGAGTCAAATTCAAATGTTTCTTACCCATTTCAAAGTGAAATTGTTGAACCACCAACTACTTCTAGGGTTACTCATATGCCTTCATCGGTTAAATTGGAAAACATTAATGGAGGTTTGAATTTGCTAAGATCTTCATTGAGTATCTCGGAGAATAACAACCATTACAATTCATGGCCTGATTTTTCTAGTCTTGCTTCTTCTTCCGCTAGTCATCTCTAG 879 0.3276 MVFSSIPSYLDPLNWHQQPNPHQANGSDSHQSHNLLPHGGGSMIRPSSIANSNQAQVQTQTQAQQPKIQPQETTLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKKSTTTNTTSSKTPLLSNSNEKDYSLSNSTSLGEFLHPTNNRTYLTPLGVGNIGQMGFQIGDYSSNIAVGEGGGGLDQWRFQQFPFLNGFESNSNVSYPFQSEIVEPPTTSRVTHMPSSVKLENINGGLNLLRSSLSISENNNHYNSWPDFSSLASSSASHL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02575 292 MobiDBLite consensus disorder prediction 13 36 - -
Car01g02575 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 289 IPR045174 GO:0003700|GO:0006355
Car01g02575 292 MobiDBLite consensus disorder prediction 133 153 - -
Car01g02575 292 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 9 289 - -
Car01g02575 292 MobiDBLite consensus disorder prediction 120 153 - -
Car01g02575 292 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Car01g02575 292 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Car01g02575 292 MobiDBLite consensus disorder prediction 13 71 - -
Car01g02575 292 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Car01g02575 292 MobiDBLite consensus disorder prediction 45 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02575 Car-Chr1 51460056 51461382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02575 1 131 C2C2-Dof Transcription Factor Family AT2G37590 49.677 3.98e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car01g02575 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02575 - - cam:101511165 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02575 01 51460056 51461382 Car01g02575 01 51460056 51461382 ECH
Car01g02575 01 51460056 51461382 Car06g03585 06 67116904 67118914 PCT