Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01945 ATGAACACTTCCTCTCAGTTTCTCTTCCTTTTGCTCATTGTCATTTGTTTCATATCTCTAACAACTTTTGGAGCTACTACTATTCACCCCGACGAAAAGAAAGCTCTTGAAGTTGTAGCTACATCACTTGGTAAGAAGGATTGGAACTTCGACATAGATCCATGCAGCAACAAACCTAACTGGGCTACGCCTCCCATATCGAACATCGTGGAAAACAATGTCACCTGTAACTGTTCTGTTGCTGGTGACAACTTCTGCCATGTTGTTACAATAACTTTGAAAGGGCAAAATCTCCCCGGCACGCTCCCACCAGAACTGAACAGGTTGCATTACCTTCAAATTATTGATCTCTCTCGCAATTACCTGAACGGTACAATTCCTAAAGAATGGGGCTCCATGATGAATCTTCTTAACATTACCCTTCTCGGAAATCGATTAACGGGTTCAATACCAATGGAGATTGCAAACATATCTACTCTAGTACAGTTGGAGTTAACTACCAATCAAATGTCAGGAAATCTTCCTCCAGAGCTTGGGAATCTAACCCAGATTCGAACACTGAGACTTTCCTCTAACAATTTTACTGGAGAACTACCTTTGACATTGGCCAAGCTCACTACATTGCAAGATTTACAAATTTCGAACAACCAATTTTCTGGAAAGATACCTGACTTTATTCAGAACTGGACAAATATCAATTCACTAATCATTCAAGGGAGTGGATTAAGTGGCCCCATTCCTTCTGAAATTTCTCTTTTGAGAAACATAACTGACTTGAGAATTAGTGATTTGAATGGATTTGAATATGCACCTTTGCCACAGCTTAAAAATATGCCATTGTTAAAAAATCTGATTTTGAGGAACTGCAACATCAATGGGAAACTACATGATTATCTTGCAACTATGACAACATTAAAACACTTAGACCTCAGCTTTAACAAATTAAGTGGGACAATTTCGAGTACCTATGCAGACATGAATGGTGTGAAATACATATTTTTAACTGGAAACCTTCTCTCTGGACCGGTGCCTGCTTGGAGAAAGAATGTCGACGTAGATCTTTCATACAATAACTTCAACATCAGCCAAGGGAGTCAGATATGTCAAAATGAAAAAGTGAACTTGTTTTCTACCTTATGGGCACGCAATGACATAGGAACAGTTTCGTGTTTGAGCTTTCAATGTCCCAAACCATCATACTCCCTTCATATAAATTGTGGTGGAAAGCAAACAACAGTCAACAGAACAAGTTATGATGGTGATTCAGATTCATCTGGACCAGCTAGATTCCATGTCAGTCCAACAGGAAATTGGGCATTTAGCACCACTGGTATATTCATTGATGGTGATCAACTTGGAGAAACTTATTCCCCGCAAAATATCGCTACACTTACTATGGTGGATGCTGAATTGTACATGAATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGGTTTTGCCTGGAAAATGGAAGCTACTCGGTAACTCTACATTTTGCTGAAATAATGTTCACAGACGATCAAACTTATGCTAGTCTTGGAAGACGTGTATTTGATATCTACCTTCAGGGAAAGCAGATGCAAAAGGAGTTCAATATTGCAGAAGAAGCAGGAGGAGTTGGTAAGAAAGTCATAAAACGGTACAAAGATGTTGTTGTTACTAGTAATACCTTGGAGATCCGCTTATATTGGGCTGGAAAAGGGACACAGGCTCTCCCAAATAGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTAGAATCTGACTCTGCACATGGAAGCAGTATATCTGCAGGAGTTGTCGTTGGAATTGTGGTTGCAGCAACAATTGTTATCATTCTAGTATTTGGTATACTTTGGTGGAAAGGATGTTTTGGAAAGAAAAACTCTTTATCAAGAGAGCTAAATAGTTTAAACCTTCAAACTGGCTTATTTACCTTAAGACAAATCAAAGCAGCAACCAACAACTTTGATATTTCCAATAAGATTGGAGAAGGAGGATTTGGTCCTGTGTACAAGGGATGTTTACCCAATGAGACATTGATAGCAGTCAAGCAACTTTCTTCTAAATCAAAGCAAGGGAATCGTGAGTTTCTAAATGAAATAGGCATGATTTCTGCTTTGCAACATCCATATCTCGTCAAACTCTATGGTTGTGGTGTGGAAGGCGATCAATTGTTGTTGGTATATGAATACTTGGAAAACAATAGTCTTGCTCGTGCGTTATTTGGTCCGGAGGAACACCAAATAAAATTAGATTGGTCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAAAGGTTTGGCATTCCTCCATGAAGAATCAAGACTGAAGGTTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAGGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGTTGAAGAGGACAATACTCACATTAGCACGAGAATTGCTGGGACCTACGGATATATGGCTCCTGAATATGCAATGCGTGGTTATTTGACTGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCTTTGGAAATCGTTAATGGAAGGGGAAACACCATTTCTCGGTCAAATGAGGAGGAAGCATTGTATCTTCTTGATTGGGCACAATTGTTGAAAGAGAGAGGTGACCTAATGGAGCTAGTTGATAGAAGATTAGGTTCAGATTTCAACAAAAAGGAAGCTATGGTGGTGATCAATGTGGCTCTCCTATGCACCAATGACACTTCAAACCTAAGGCCCTCTATGTCGTCGGTGGTAAATATGCTTGAAGGAAGGATTGTGGTTCCAGAATTTGTTTCAGATTCAAGTGAAGTAATGGATGAAAATAAGTTTGAAGTAATGAGGCAGTATTACAGTCAAATGGAAGGAAATAAGGTAAGTAAGTCACAAACACAAAGTCGGAGTTCATCAACTGATGGGCCGTGGCCTGCTTCATCCTCATCAGCTTTAAACCTTTATCCTATCCACAGTGATTCTTCCTATTGGGAGAAAAGAAAATAA 3027 0.3925 MNTSSQFLFLLLIVICFISLTTFGATTIHPDEKKALEVVATSLGKKDWNFDIDPCSNKPNWATPPISNIVENNVTCNCSVAGDNFCHVVTITLKGQNLPGTLPPELNRLHYLQIIDLSRNYLNGTIPKEWGSMMNLLNITLLGNRLTGSIPMEIANISTLVQLELTTNQMSGNLPPELGNLTQIRTLRLSSNNFTGELPLTLAKLTTLQDLQISNNQFSGKIPDFIQNWTNINSLIIQGSGLSGPIPSEISLLRNITDLRISDLNGFEYAPLPQLKNMPLLKNLILRNCNINGKLHDYLATMTTLKHLDLSFNKLSGTISSTYADMNGVKYIFLTGNLLSGPVPAWRKNVDVDLSYNNFNISQGSQICQNEKVNLFSTLWARNDIGTVSCLSFQCPKPSYSLHINCGGKQTTVNRTSYDGDSDSSGPARFHVSPTGNWAFSTTGIFIDGDQLGETYSPQNIATLTMVDAELYMNARVSPISLTYYGFCLENGSYSVTLHFAEIMFTDDQTYASLGRRVFDIYLQGKQMQKEFNIAEEAGGVGKKVIKRYKDVVVTSNTLEIRLYWAGKGTQALPNRSVYGPLISAISVESDSAHGSSISAGVVVGIVVAATIVIILVFGILWWKGCFGKKNSLSRELNSLNLQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGCLPNETLIAVKQLSSKSKQGNREFLNEIGMISALQHPYLVKLYGCGVEGDQLLLVYEYLENNSLARALFGPEEHQIKLDWSTRQKICVGIAKGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLVEEDNTHISTRIAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVNGRGNTISRSNEEEALYLLDWAQLLKERGDLMELVDRRLGSDFNKKEAMVVINVALLCTNDTSNLRPSMSSVVNMLEGRIVVPEFVSDSSEVMDENKFEVMRQYYSQMEGNKVSKSQTQSRSSSTDGPWPASSSSALNLYPIHSDSSYWEKRK 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01945 1008 MobiDBLite consensus disorder prediction 964 993 - -
Car01g01945 1008 Gene3D Ribonuclease Inhibitor 199 265 IPR032675 -
Car01g01945 1008 Gene3D Ribonuclease Inhibitor 32 198 IPR032675 -
Car01g01945 1008 ProSiteProfiles Protein kinase domain profile. 659 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01945 1008 Gene3D Transferase(Phosphotransferase) domain 1 735 941 - -
Car01g01945 1008 Gene3D Phosphorylase Kinase; domain 1 627 734 - -
Car01g01945 1008 SUPERFAMILY Protein kinase-like (PK-like) 642 943 IPR011009 -
Car01g01945 1008 SMART serkin_6 659 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01945 1008 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 976 - -
Car01g01945 1008 SUPERFAMILY L domain-like 67 344 - -
Car01g01945 1008 Gene3D - 398 592 - -
Car01g01945 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Car01g01945 1008 Gene3D Ribonuclease Inhibitor 266 379 IPR032675 -
Car01g01945 1008 Pfam Protein kinase domain 661 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01945 1008 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 976 - -
Car01g01945 1008 CDD STKc_IRAK 665 933 - -
Car01g01945 1008 Pfam Malectin domain 401 586 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01945 Car-Chr1 44150545 44161915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01945 25 981 Receptor kinase-like Gene Family AT1G53420 54.068 0.0 985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g01945 Pkinase 5.1e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01945 01 44150545 44161915 Car07g02300 07 36423494 36438781 ECH
Car01g01945 01 44150545 44161915 Car01g01945 01 44150545 44161915 ECH