Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01875 ATGGCTACGGTTGTTGTTGCTGACATTTCAGCTGATTCCAACAAAATGGACTCAAAACCAAAGACAGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGTTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTTATTCTCCTAATCATGATCATCGTCCTCAGGGCTTTAATCTTCTCACACCTGCCAATTTTTTGGTTAACACTAAGCCATCAGCTAATGATAATTCCCCAAATAATCGAAGGAGAAGAAACAATTTTACCCAAGGGAGGAGAAGGTTGAACGGAAGATCGCTAAAGGCTCAAAGAGAAGATAGCGTTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTCATTGATTGCCGAATTTGTGGCGATCCACATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCAGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACCGTGCTGGGATACTATCCAGTGAGGGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAGAACTTTTTTGAATCAGCTTGCCGTGGTGAGGTTACGCGTTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCAATCACCGCGCTCAACTGCAGCGGAATGCCCTTGGGAACTCAACCTATCAGGGTAAGTCCTTCGAAGACTCCGGTGAGGCCACGAGTCACTCGTCCAGTATCGCATTAA 900 0.4378 MATVVVADISADSNKMDSKPKTESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRPQGFNLLTPANFLVNTKPSANDNSPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESACRGEVTRLRLLGDQVHSTRIAFVEFAMAESAITALNCSGMPLGTQPIRVSPSKTPVRPRVTRPVSH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01875 299 MobiDBLite consensus disorder prediction 72 88 - -
Car01g01875 299 MobiDBLite consensus disorder prediction 72 105 - -
Car01g01875 299 CDD RRM1_CID8_like 111 190 IPR034823 -
Car01g01875 299 SUPERFAMILY RNA-binding domain, RBD 77 189 IPR035979 GO:0003676
Car01g01875 299 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 14 298 - -
Car01g01875 299 SUPERFAMILY RNA-binding domain, RBD 200 293 IPR035979 GO:0003676
Car01g01875 299 SMART rrm1_1 114 184 IPR000504 GO:0003723
Car01g01875 299 SMART rrm1_1 211 283 IPR000504 GO:0003723
Car01g01875 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Car01g01875 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Car01g01875 299 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 14 298 - -
Car01g01875 299 MobiDBLite consensus disorder prediction 279 299 - -
Car01g01875 299 Pfam Ataxin-2 C-terminal region 34 49 IPR009818 -
Car01g01875 299 Gene3D - 198 292 IPR012677 -
Car01g01875 299 Gene3D - 71 189 IPR012677 -
Car01g01875 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Car01g01875 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01875 Car-Chr1 43005911 43011438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01875 110 268 Eukaryotic Initiation Factors Gene Family AT1G34140 26.543 1.16e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01875 01 43005911 43011438 Car01g01875 01 43005911 43011438 ECH