Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01855 ATGCTTATATTAGTTGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCACCAGTGAGTTTAGGGAGGAGTTTCATTGGTGTGAGTAGTTCCTCTAGAATGTCACATTCTGTTGTGAAAAGAGTTTCTCTTTCAAAAGGGAATTTTAATAAAGGAAAAAAAAGATGGCATTGTGTTTCCTTATCTGTTTGTAGATATTCAGTTACCACAACTGATTTTATTGCTGACCAAGGAAATTCAGTGTCCCTTGATTCTAATAGCAATGACGATGATAGTAAAGGTAGTGGAGATAGTGGTAGTGGTGCTAGTTTTGGTCTTAAACCTCCTCCTAAGCCTGTGTTGAAGTCATCTGATAATAACCCGATTTTAGGTTCGAGTTCGGGTTTAGGGGGTTTATCAAGGAATAGTGAGGGTTCTGATGATGTGGATGAGAGGAATAAGGTGATTGAATCACTTGGAGAGGTTTTGGAGAAGGCTGAAAAGCTTGAAAATTCTAAGTTGGATGGTGAAAGGAGTAACGGGTCGATAAATAGACCGGCGAGACCGGAGATAAATGCTAAACCTATGAATGATAAGCCAGTAAATTCGTTACAAAAACATAAAGCTAAAACATTGAAGAGTATATGGCGTAAAGGGGACTCGGTTGCGACTGTGCAGAAGGTTGTGAAGGAAGTACCTAAGCCTAATATCAAGAGGGAAGTAGGGGAATCTCAGATAGGTGGAGGGGCAAATGTAACATCATCTCAGTCTGGTGATCCACAGCCTCCTTCGAGACCTCAACCGACATTACAGTCTAGGCCTTTTATAGCCCCGCCACCCGTTAAAAAACCAATTATCTTGAAGGATGATAGGGGACAAGCGGAAACACCTGTTCCATCTAAGGAAAAGAAGGCCCCGATCTTGATCGATAAGTTTGCGTCAAAGAAACCAGTTGTTGACCCTGTAATTGCTCGATCAGTTCTATCCCCTTCGAAATCGGGGAAGGCGCCTGCCACGGGAAGGTTTAGAGATGATTACCGGAAGAAAGGTGCTTCGGGTGGGGAAGGACCGAGAAGACGAATGGTAGTGAATGATGATGGGATTCCTGACGAGATATCAGGAACTGCAAGAAAAGGAAGGAAATGGAGCAAAGCAAGTCGGAAGGCGGCGCGGCTTCAAGCTGCCAAGGATGCTGCTCCTGTGAAAGTCGAAATTCTAGAGGTCAGCGACAAAGGTATGCTGGTGGAGGAGTTGGCATACAATTTGGCGATCGGCGAAGGTGAAATCCTAGGTGCTCTGTACTCCAAGGGGGTTAAACCAGATGGGGTACAAACTCTAGACAAAGATATGGTGAAGATGATTTGTAAAGATTATGATGTGGAAGTCATAGATGCCGATCCTTTCAAAATTGAAGGATTAGTGAAGAGACGGGAAATTCTTGAGGAAAATGACCTTGACAAACTCAAAGACAGGCCTCCTGTTATTACTATCATGGGTCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGACCAAGGTAGCTGCTTCGGAAGCTGGCGGAATCACACAGGGAATTGGAGCTTATAAAGTTCAAGTACCTGTTGATGGAAAAACGTTACCATGTGTTTTCCTTGACACTCCTGGCCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGCGTAACGGACATTGCTATTGTTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCGATAATCATCGCTATAAACAAGATAGATAAAGACGGGGCGAATCCTGAACGAGTTATGCAAGAACTTTCTACAATTGGTTTGATGCCAGAAGACTGGGGCGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGACGATCTTTTGGAAACTGTTATGCTTGTTGGGGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGATGGGCACCGTCATTGAAGCGGGATTGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAAAATGGGACACTTAGAAGGGGAGATATAGTAGTTTGTGGAGGAGCTTTTGGAAAGGTGCGGGCTTTATTCGATGATGGTGGAAAGCGTGTCGATGCAGCTACACCTTCTATACCTGTTCAGGTTATTGGATTGAATAATGTTCCAGTTGCTGGTGATGAATTTGAGGTGGTTGAATCCCTTGATACCGCACGTGAAAGGGCAGAGTCTCGTGTTCTGTCATTGCGAGATGAACGTATTTCAGCAAAGGCAGGAGATGGCAAGGTCACCCTTTCTTCCTTAGCTTCCGCAGTTTCATCGGGAAAGCTTGCTGGACTAGACTTGCATCAACTGAATATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAAACAAGCCTTGCAGGTGCTACCACAAGATAATGTCACACTCAAGTTTTTGTTGGAAACAACAGGTGATGTGAGCACAAGTGATGTTGACCTTGCGGCTGCAAGCAGAGCAATTATTTTTGGATTCAATGTCAAAGCGCCAGGCTCTGTGAAAAGCTATGCGGACAATAAAGCTGTTGAGATAAGGTTGTATAGAGTTATTTATGAATTAATTGATGACGTACGAAAAGCAATGGAAGGGCTACTGGATTCTGTTGAGGAACAAGTAACAATTGGCTCAGCAGAAATACGTGCCGTATTCAGCAGTGGTAGTGGCCGTGTTGCTGGATGTATGGTTACAGAGGGCAAGGTTACAAAAGGATGTGGCATTCGAGTCATTCGGAAGGGAAAAATAGTTCATGTTGGTATTCTTGACTCTTTGCGACGAGTGAAAGAGATTGTTAAAGAGGTAAATGCAGGTCTTGAGTGTGGACTAGCGACAGAAGACTATGATGATTGGGAAGAGGGTGATATTCTTGAAGCCTTCAACACAGTTGAGAAAAGGAGAACCCTTGAAGAGGCTTCAGCATCAATGGCAGCTGCTGTGGAAGGAGTAGGAGGAGCTTAA 3036 0.4401 MLILVGNVQGTMSSLASPVSLGRSFIGVSSSSRMSHSVVKRVSLSKGNFNKGKKRWHCVSLSVCRYSVTTTDFIADQGNSVSLDSNSNDDDSKGSGDSGSGASFGLKPPPKPVLKSSDNNPILGSSSGLGGLSRNSEGSDDVDERNKVIESLGEVLEKAEKLENSKLDGERSNGSINRPARPEINAKPMNDKPVNSLQKHKAKTLKSIWRKGDSVATVQKVVKEVPKPNIKREVGESQIGGGANVTSSQSGDPQPPSRPQPTLQSRPFIAPPPVKKPIILKDDRGQAETPVPSKEKKAPILIDKFASKKPVVDPVIARSVLSPSKSGKAPATGRFRDDYRKKGASGGEGPRRRMVVNDDGIPDEISGTARKGRKWSKASRKAARLQAAKDAAPVKVEILEVSDKGMLVEELAYNLAIGEGEILGALYSKGVKPDGVQTLDKDMVKMICKDYDVEVIDADPFKIEGLVKRREILEENDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPVDGKTLPCVFLDTPGHEAFGAMRARGASVTDIAIVVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSTIGLMPEDWGGDVPMVQISALQGKNVDDLLETVMLVGELQELKANPDRSAMGTVIEAGLDKSKGPFATFIVQNGTLRRGDIVVCGGAFGKVRALFDDGGKRVDAATPSIPVQVIGLNNVPVAGDEFEVVESLDTARERAESRVLSLRDERISAKAGDGKVTLSSLASAVSSGKLAGLDLHQLNIILKVDLQGSIEAVKQALQVLPQDNVTLKFLLETTGDVSTSDVDLAAASRAIIFGFNVKAPGSVKSYADNKAVEIRLYRVIYELIDDVRKAMEGLLDSVEEQVTIGSAEIRAVFSSGSGRVAGCMVTEGKVTKGCGIRVIRKGKIVHVGILDSLRRVKEIVKEVNAGLECGLATEDYDDWEEGDILEAFNTVEKRRTLEEASASMAAAVEGVGGA 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01855 1011 Pfam Elongation factor Tu GTP binding domain 488 647 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 Gene3D Translation factors 659 775 - -
Car01g01855 1011 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 41 1002 - -
Car01g01855 1011 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 41 1002 IPR015760 -
Car01g01855 1011 Gene3D - 791 895 IPR036925 -
Car01g01855 1011 MobiDBLite consensus disorder prediction 228 277 - -
Car01g01855 1011 TIGRFAM IF-2: translation initiation factor IF-2 404 994 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Car01g01855 1011 MobiDBLite consensus disorder prediction 78 145 - -
Car01g01855 1011 MobiDBLite consensus disorder prediction 78 99 - -
Car01g01855 1011 PRINTS GTP-binding elongation factor signature 487 500 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 PRINTS GTP-binding elongation factor signature 539 549 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 PRINTS GTP-binding elongation factor signature 555 566 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 PRINTS GTP-binding elongation factor signature 591 600 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 MobiDBLite consensus disorder prediction 160 197 - -
Car01g01855 1011 ProSitePatterns Initiation factor 2 signature. 945 967 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Car01g01855 1011 MobiDBLite consensus disorder prediction 118 134 - -
Car01g01855 1011 MobiDBLite consensus disorder prediction 322 377 - -
Car01g01855 1011 Hamap Translation initiation factor IF-2 [infB]. 7 992 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Car01g01855 1011 SUPERFAMILY Translation proteins 898 992 IPR009000 -
Car01g01855 1011 CDD IF2_eIF5B 486 652 - -
Car01g01855 1011 SUPERFAMILY Translation proteins 659 743 IPR009000 -
Car01g01855 1011 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 790 902 IPR036925 -
Car01g01855 1011 Gene3D Translation factors 896 993 - -
Car01g01855 1011 CDD IF2_mtIF2_II 663 755 IPR044145 -
Car01g01855 1011 TIGRFAM small_GTP: small GTP-binding protein domain 485 646 IPR005225 GO:0005525
Car01g01855 1011 CDD mtIF2_IVc 902 984 - -
Car01g01855 1011 Pfam Translation-initiation factor 2 791 884 IPR023115 -
Car01g01855 1011 Gene3D - 480 658 IPR027417 -
Car01g01855 1011 MobiDBLite consensus disorder prediction 254 274 - -
Car01g01855 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 656 IPR027417 -
Car01g01855 1011 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 483 656 IPR000795 GO:0003924|GO:0005525
Car01g01855 1011 Coils Coil 742 762 - -
Car01g01855 1011 MobiDBLite consensus disorder prediction 331 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01855 Car-Chr1 42669537 42677855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01855 484 882 Eukaryotic Initiation Factors Gene Family AT1G76810 28.289 3.22e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01855 01 42669537 42677855 Car01g01855 01 42669537 42677855 ECH