Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01847 ATGAGCAACATAAGCATGGTAGAGGCAAAGCTTCCACCAGGGTTCAGATTCCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTTACACATAGTGATTCTCTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGAAGCAGCATGTGTGGGAGGGAAGGAGTGGTATTTCTATACACAAAGAGACCGAAAGTATGCAACAGGACTGAGAACAAATCGTGCAACTGCATCAGGGTATTGGAAGGCAACAGGGAAGGACAGAGCTATCCTTCGCAAGGGCAGTCTTGTTGGGATGAGAAAGACTTTAGTTTTCTATCAAGGAAGGGCACCTAAAGGGAGAAAAACTGAATGGGTCATGCATGAGTTTCGTATTGAGGGTCCTCATGGCCCTCCTAAAATTTCTTCTTCTAAGGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAATTGCTGCAAAACCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCTCTTCCAGCATTAATGGATTCGTACATAAGTTTTGACCAAGCTCAATTCCATGCAGATGAATATGAGCAAGTGCCCTGCTTCTCCATCTTTTCTCAAAACCAAACCAACCCAATCTTCAATAATATGGAACCAAAATTACCTCCATACAACAATAACAATAATAATAATGCAAACACATTTGGAGGAGCACCTAATTTGGGTAATTATAGCTTAGACCCTTTATCATGTGATAGAAAAGTGTTGAAAGCTGTTTTGACTCAACTATCAAAAATGGAAAGAAATAACCCACTtaataataataataacaataataatCAAAGTCTTAAAGGGTCACCAAGCTTAGGAGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTAGGTATGCCCCACATGTGGAACAATTACTAA 945 0.3968 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREIAAKPSMGSCYDDTGSSSLPALMDSYISFDQAQFHADEYEQVPCFSIFSQNQTNPIFNNMEPKLPPYNNNNNNNANTFGGAPNLGNYSLDPLSCDRKVLKAVLTQLSKMERNNPLNNNNNNNNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01847 314 MobiDBLite consensus disorder prediction 270 299 - -
Car01g01847 314 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Car01g01847 314 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Car01g01847 314 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 223 - -
Car01g01847 314 PANTHER BNAC05G40360D PROTEIN 3 223 - -
Car01g01847 314 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Car01g01847 314 MobiDBLite consensus disorder prediction 270 301 - -
Car01g01847 314 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01847 Car-Chr1 42502314 42507424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01847 2 312 NAC Transcription Factor Family AT1G56010 58.663 4.32e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g01847 NAM 2.1e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01847 01 42502314 42507424 Car01g01847 01 42502314 42507424 ECH