Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01841 ATGGCAACACTATTGAATACAGTGTTATCGGCTTCAAATTTACCTGCAAATCCAAAAAGAAACGGTTGCAGTTTCTTATATTTTCATGTTCCAAATCTTCATAACCACACTTTTCTTACTTTCAACAAAAAGCGTTTGTCTAGAGTTTTAGCTTCGACCCACATCACTATTCCTTCCAAAGATTCAGTTTTTAACCTGCCCAATTGGAAAGCTGGGAAGAATGACCAGAAAAGCAGAGAAATTAGAATCAATGATGCATTTCTTCACTTAGAATACATGGTTGGTAAGGGTCATAAGCCTGATGTAGTTCAAGCAACTCAGCTTTTGTATGATCTTTGCAAATCTGGTAAAGCTAGAAAAGCTGTTAGGGTTATGGAGATTATGGGAGGTTCAGGTATTATACCTGATGTTGCTTCATATACATTTTTGGTTAATTATTTGTGTAAGAGAGGCAATGTTGGGTATGCAATGCAATTGGTTGAAAAAATGGAAGGACTTGGTTTTCCAACTAATACTGTTACCTATAATACTTTGGTTAAAGGGCTTTGTACGCATGGGAAATTAAATCAGAGTATGCAGATTTTAGATAAGTTGATAAAGAAAGGCCTTGTCCCAAATGCAATTACTTATTCTATCTTGCTTGAAGCTGCTTATAAGGAAAGGGGAGTGGATGAAGCAATGAAGCTACTAGATGAGATAATTGCAAAGGGCGGCGAGCCTAATTTGGTTAGCTACAATGTATTGTTGACTGGACTGTGTAAGGAAGGTAGAACTGAAGAAGCTATTGAGCTTTTTAGAGAATTACCTGCAAAAGGGTTTAAACCTTGTGTTGTGAGTCATAACATTTTGCTGAGGAGTCTGTGCTATGATGGGCGATGGGAGGAAGCCTACAAGCTTTTAGCAGAGATGGATGAAGAGGGTCAGGCTCCTTCTGTTGTTACCTACAACATATTGATCACTTCTCTTTCTCTTCATGGAAGAATAGAACAAGCTTTCAAAGTTTTAGATGAAATGGCAAGGAGTGGATTCAAGGTGAGTGCTAATAGCTACAATCCGATTATTGCCCGCCTCTGCAAGGAAGGGAAGGTGGATCTTGTTATTCGGTGTTTAGACCAAATGGTTAATCGGCGCTTTCATCTTAACGGAGGAACGTACAATGCTATTGCCTTGTTTTGTGAGCAAGGGAAGGGGAAGGAAGCTTTCTTAATATTTGAAAGGTTGGGTAAAAAACAAAACTACCCTATACATGATTTCTACAAAAATGTGATTACAGTCTTGTGTAGGAAAGGGAATACATATTCAGCCTTTCAGATATTATATGAAATGACGATGCACGGATTTACTCCCGATTCCTATACTTACTCGTCTTTGATAAGAGGAATGTGTAGGGAGGGAATGTTCGACGAGGCTCTTGAGATATTTGGGATTTTGGAAGAACATGACTATGTGCCTCATGTTGATAACTACAATGCACTCATACTTGGATTTTGCAAATCTCATAAAATAGACTTATCAATTGAGGTATTTCAAATGATGGTCAACAAAGGATGCATGCCTAATGAGATAACCTATACCATTCTTGTTGAAGGGATTGCTTTTGAAGAAGAAAATGATTTAGCAGCTAGCCTGTTGAAAGAGTTATGTTTGAAAGGGGTTCTGAGTAAAAATACTGTGGAAAGACTTTCGATGCAATACGACCTCAAGGAATTAACAGGGTAG 1719 0.381 MATLLNTVLSASNLPANPKRNGCSFLYFHVPNLHNHTFLTFNKKRLSRVLASTHITIPSKDSVFNLPNWKAGKNDQKSREIRINDAFLHLEYMVGKGHKPDVVQATQLLYDLCKSGKARKAVRVMEIMGGSGIIPDVASYTFLVNYLCKRGNVGYAMQLVEKMEGLGFPTNTVTYNTLVKGLCTHGKLNQSMQILDKLIKKGLVPNAITYSILLEAAYKERGVDEAMKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIELFRELPAKGFKPCVVSHNILLRSLCYDGRWEEAYKLLAEMDEEGQAPSVVTYNILITSLSLHGRIEQAFKVLDEMARSGFKVSANSYNPIIARLCKEGKVDLVIRCLDQMVNRRFHLNGGTYNAIALFCEQGKGKEAFLIFERLGKKQNYPIHDFYKNVITVLCRKGNTYSAFQILYEMTMHGFTPDSYTYSSLIRGMCREGMFDEALEIFGILEEHDYVPHVDNYNALILGFCKSHKIDLSIEVFQMMVNKGCMPNEITYTILVEGIAFEEENDLAASLLKELCLKGVLSKNTVERLSMQYDLKELTG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 411 477 IPR011990 GO:0005515
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 201 269 IPR011990 GO:0005515
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 478 549 IPR011990 GO:0005515
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 270 340 IPR011990 GO:0005515
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 341 410 IPR011990 GO:0005515
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Car01g01841 572 Gene3D Tetratricopeptide repeat domain 52 199 IPR011990 GO:0005515
Car01g01841 572 Pfam PPR repeat 132 164 IPR002885 -
Car01g01841 572 Pfam PPR repeat 236 267 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Car01g01841 572 Pfam PPR repeat family 419 463 IPR002885 -
Car01g01841 572 Pfam PPR repeat family 275 322 IPR002885 -
Car01g01841 572 Pfam PPR repeat family 171 216 IPR002885 -
Car01g01841 572 Pfam PPR repeat family 485 530 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Car01g01841 572 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 571 - -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Car01g01841 572 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 571 - -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 139 169 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 173 207 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 243 275 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Car01g01841 572 TIGRFAM PPR: pentatricopeptide repeat domain 452 484 IPR002885 -
Car01g01841 572 Pfam Pentatricopeptide repeat domain 333 388 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Car01g01841 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Car01g01841 572 SUPERFAMILY TPR-like 149 438 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01841 97 568 Glycosyltransferase AT1G05670 25.263 3.37e-42 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01841 01 42388312 42390030 Car01g01841 01 42388312 42390030 ECH