Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01838 ATGAAATCTGCAAGAGAGAAAGAAAACGAACGGTGCATGAGTTCGCACCATCGCCGTCTACTCCACGCCTTAAACCTTGGCACCAGACATTTCGATGAGAACACAAATAGATGGAAGTGGCAGTGCGCAAATATTGAAGTTCACAAAAATGTACTAAGATCGATTAATGCATTTCTTGATTCTCTATCTGGAGATGCACGTGCGCCACGTCATACTATCGTTAAGGAATCTGCTGCTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAGTGAACCCTTGTTAAGCATGGCATCAAATGTGGCAGTTAAGTTGGTTACTGTTTTACCGACTCCACTTCTGCAATCAGGTTTGTTGGATCTTGTCTATTGCCTATCGTCCTTGCTATCTTCACATCAGGTAGAAGTTGCAATACCCTGTGCTACTGCTTTGAATTTGATCATCTCAAATGTCAGTGCTACTAGTGAGAAGGCAGTTATTCAAGCACTGAAAGAAACAGATATCTCTATTTGTATTGTTGGAAATATAAAAGATTATTTTACCTGTGGTGTGAAGAAAATTGAATATTTTCTGGAGATGACTTCACTTTTGAGTACAATACTGTTGCGGTGGCCTTCATCCCGGTTCCCTGTTTGTAATGATGTTGAACTTATGAAAGGTTTAGCAAACATGTATACAACGACGGATAGTTCGATTAAACTTGTTCTTCTAAAGCTGTACACATCCTTAGCTTTATGTGATTCTGTAGCACAAAAACTTATAGACGGTGGAAAGGTATTTCTCCAAATGATTGTGCAGGCAATGGGAAAATCAAACCCTCATGATGTTCGGATAGAAGCGTTTCGGCTTGCTCAATGTCTATTGAGATCCAGAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCTCTTGTTGATGCCATACTTTGTGGGATGAGAGAGACAAAACCGTGTTCCAAAAAAGTTGAGAACAACCATGGTTCTCTATTAGTGGAAGCATGTCAGTTGGCTCTAATTACTCGTTGGGCTGGTGATCATCATATCAGGTTTTGGAAACAAGGAATTGATAGAGTCCTCCTTAATCTTCTGATTGAAAATATTCATGACCAATCATCTGAACTTGTCTTGTCATTGGAAAAACAAATATCCATGGTGAAGGAGGGATTGAAAGTCAATTATCACGTTGCTCTGAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCTCATACCCATGGAAGTGGGCTCCATATCAACTTATTGATTCTGTGTGCATGCTTGACTTTTGTTGATACAATCCAAAAATGGTGCCGGATATGTCGAAAGGATGTTGATGATAATTTTCAAAGCGAACCAGTATCAAGGGCTGTTCTAATGATGATATATTCTCCGTGTAATCACATTTCCTCACATGCTAGATTTGTATTATCTGATATACTGAAGGTGAAAGGCGCTTCGTGCTTGAAAAACTTAATACATACCCTTGATTATATATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTTGTCATTAACTTATTCGGGTTAACTTGTCTTTCAAGTTTACCAGAGTATCAAAGATGTATCACAGAAGGCAGAGGGATAAAGGTCGTTGTTCTTCTTGTGCAACGATGCTTAAGTAATGATATTTATGTAGAAAGGTCTGAAGTTGCTCCTCATTTGGATACAGTACTCCATAAAAGGTCTTGTTGCTGGGTTGGTAAAGGAGACTGGGAAGGTTCCAATGTTCTCTTATTTTATGGTTTGTGGGGCTTAGCTGAATTTCTTCATCAATGTGGCTTTTTAGAAGACAAACCTCAGCAATTTACTAGAGAGGTGGTAAACATTAAAACTCAGTTAGTTGACAAACTTCATGAGATTTGTAGTAGCACCTCTTCCAGCCCTGGAGTGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATTGGGAAATCTCTTAATAAGGAAGAATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCAATGTCCATCGCTTCTACCTCCTGGAGTGTTATCTAGTAATAAGAGTCCTAAAGAAGTAACAGATTATTTTGATGGAGCGACCTTGAGAGAAGTTCGCTATTCTTCTCATGTTGATTATGAAGCATTGTTGTTGTTCTTGGAATATGTATATTTGGGATGCTTACATGTGGTAGAAGAAGAAACTGTGAAGAAACTCAAAATTCTTGCTAAGCGTTGCAATCTACAGCCTCTCTTGCAAATGCTTTGCAGACAATCTCCAAAATGGGGCACGCCTTTCCCCAGCTTTAATCTTACTTCATCTCTCGATTCAGCTGGAAGTTATTTTTCAGATGTCATAATGGAAGCTAAATCAAATGAGCTTGTTGGATGGACATGTGATATTTGTTCTCACCCAGTACCGCATTTGCATGTTCACAAAGTTATATTGCAGTCTGGATGTGATTATTTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGTTGTTATGGTTGATGTTAGCTGGGAAGCATTGATTAAACTAGTACAGTGGTTTTATTCTGACGATCTGCCAAATCCCCCGTCTGGTTGTTTGTGGGTTAACATGGATGATCAAGAAAAGCTATTCAATTTGCAGCCATATGTGGAGCTCTGTTGGCTTGCTGAGTTCTGGATTTTGGAAAGTATTCAGGAAGCCTGCTGGAATGCGATTATGTCCTGTCTTGATTCTTCGAAGCAATTGTCCGTTAAAATAATCAAAATGGCTTATAACCTCTCTTTGTGGAAGTTGGTTGACATTGCTGCAAATCTTATGGCTCCTTCATATAGGCAATTACGGGATTCTGGTGAACTTGAAGAATTTGATGATGCACTAGTTCACTTTATTTATTCTGCTTCAATTGTACTTAACCATGAAGGTGAAAATCGATTTAGGTGA 3048 0.3858 MKSAREKENERCMSSHHRRLLHALNLGTRHFDENTNRWKWQCANIEVHKNVLRSINAFLDSLSGDARAPRHTIVKESAADILGALLWILQCKSEPLLSMASNVAVKLVTVLPTPLLQSGLLDLVYCLSSLLSSHQVEVAIPCATALNLIISNVSATSEKAVIQALKETDISICIVGNIKDYFTCGVKKIEYFLEMTSLLSTILLRWPSSRFPVCNDVELMKGLANMYTTTDSSIKLVLLKLYTSLALCDSVAQKLIDGGKVFLQMIVQAMGKSNPHDVRIEAFRLAQCLLRSRENCLKVMDLCGEALVDAILCGMRETKPCSKKVENNHGSLLVEACQLALITRWAGDHHIRFWKQGIDRVLLNLLIENIHDQSSELVLSLEKQISMVKEGLKVNYHVALRSYLWDILGWLTIHCGENSNPHTHGSGLHINLLILCACLTFVDTIQKWCRICRKDVDDNFQSEPVSRAVLMMIYSPCNHISSHARFVLSDILKVKGASCLKNLIHTLDYISSLESYGSFDKLQLVINLFGLTCLSSLPEYQRCITEGRGIKVVVLLVQRCLSNDIYVERSEVAPHLDTVLHKRSCCWVGKGDWEGSNVLLFYGLWGLAEFLHQCGFLEDKPQQFTREVVNIKTQLVDKLHEICSSTSSSPGVKWYVSYILSYFGFYGFPNEFSKRIGKSLNKEEYADLRLIVANGDSVSVHGVILAVQCPSLLPPGVLSSNKSPKEVTDYFDGATLREVRYSSHVDYEALLLFLEYVYLGCLHVVEEETVKKLKILAKRCNLQPLLQMLCRQSPKWGTPFPSFNLTSSLDSAGSYFSDVIMEAKSNELVGWTCDICSHPVPHLHVHKVILQSGCDYLQGLFRSGMQESHSQVVMVDVSWEALIKLVQWFYSDDLPNPPSGCLWVNMDDQEKLFNLQPYVELCWLAEFWILESIQEACWNAIMSCLDSSKQLSVKIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHFIYSASIVLNHEGENRFR 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01838 1015 Gene3D - 41 383 IPR011989 -
Car01g01838 1015 CDD BTB_POZ_ZBTB_KLHL-like 842 894 - -
Car01g01838 1015 PANTHER OS06G0674800 PROTEIN 5 1009 IPR044953 -
Car01g01838 1015 SUPERFAMILY ARM repeat 48 420 IPR016024 -
Car01g01838 1015 Gene3D Potassium Channel Kv1.1; Chain A 668 793 IPR011333 -
Car01g01838 1015 SUPERFAMILY POZ domain 816 943 IPR011333 -
Car01g01838 1015 ProSiteProfiles BTB domain profile. 686 766 IPR000210 GO:0005515
Car01g01838 1015 SMART BTB_4 686 797 IPR000210 GO:0005515
Car01g01838 1015 SMART BTB_4 817 945 IPR000210 GO:0005515
Car01g01838 1015 Pfam BTB/POZ domain 842 908 IPR000210 GO:0005515
Car01g01838 1015 Gene3D Potassium Channel Kv1.1; Chain A 805 985 IPR011333 -
Car01g01838 1015 SUPERFAMILY POZ domain 665 790 IPR011333 -
Car01g01838 1015 ProSiteProfiles BTB domain profile. 817 898 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car01g01838 BTB 2.7e-07 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01838 01 42348926 42353817 Car01g01838 01 42348926 42353817 ECH