Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00409 ATGGGTGAAGAGAACCAAGGGATTAAGCTATTTGGAGCAATAATAAAATTGCATGATGAAGAATTAAAAGAGGGTGAAAAAGGAAGCGAAGATCTAACGGTGGAGAAGAAGCCAGAGGAGATCATACCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAACAACTACAACGTTAATCAACCAAGACATTTTTGCAAGACTTGTCAGAGATACTGGACGTCTGGTGGGGCCCTCCGTAACGTGCCGATTGGGGCCGGACGTCGGAAGCCCAAGCCCACCGACGGTGCACTTTATGAAACTAATTCGGGTGATGGCCATGATAAGTTTGGGTTGGTTTTGGATAAGTGGCAAGTCGACACGGCGGAGAGTAATTTCCGGCAAGTTTTATCCGGCAAGCGGAGGAGGACGACCTCAGCTTAA 432 0.4676 MGEENQGIKLFGAIIKLHDEELKEGEKGSEDLTVEKKPEEIIPCPRCKSMETKFCYFNNYNVNQPRHFCKTCQRYWTSGGALRNVPIGAGRRKPKPTDGALYETNSGDGHDKFGLVLDKWQVDTAESNFRQVLSGKRRRTTSA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00409 143 PANTHER CYCLIC DOF FACTOR 2 4 141 IPR045174 GO:0003700|GO:0006355
Car01g00409 143 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Car01g00409 143 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Car01g00409 143 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Car01g00409 143 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 4 141 - -
Car01g00409 143 MobiDBLite consensus disorder prediction 87 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00409 Car-Chr1 3198353 3199940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00409 3 142 C2C2-Dof Transcription Factor Family AT2G34140 50.307 2.55e-48 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car01g00409 zf-Dof 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00409 - - tcc:18596691 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00409 01 3198353 3199940 Car01g00409 01 3198353 3199940 ECH