Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00307 ATGGGTTTGAGTTCTAAACAAGTTTCTTCTAATAGAGATATTGATTGGAACCAAACCTTGTTGCAAGATCAAAACTTGGAGCTGCCAAAATCTCTTCCTATGAAGAaacaacaacaacaacaacaaactcaacaaTCAGAAGCTGTGAAATGTCCAAGATGTGATTCTACTAACACCAAATTTTGTTACTACAACAACTACAACAAATCTCAACCTCGCCATTATTGTAGAGCTTGTAAAAGACATTGGACAAAAGGTGGAACTTTACGCAATGTTCCTGTTGGTGGTGGTAGAAAGAATAAGAGACTCAAAAAATCAACCCCCCCAACTTCTATTAACACCTCCACAAACACTACTATTAACACCACCACAAAAACTTCTATTAGCACCACCCCCACAACTTCAAATACAAACATGGATGCTGATTTCAATACCAACATGACAAAAATTCAAACTTCACACCAAAAACAGAATCTTTCTGAGTTTGGTATTGTATCAACCTCTTTGAAATCATCCAATAATGTATATAACTATGGTGAAGAGTTTAAAACAATGGAGGATTCAAATATTAACAGTGTAATTCCAAGTACTAGTGGTGGCAATATCACACAGCCATGGGAGATGCCTGCAACAAGTAATGGAATGGAAATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA 738 0.3509 MGLSSKQVSSNRDIDWNQTLLQDQNLELPKSLPMKKQQQQQQTQQSEAVKCPRCDSTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRLKKSTPPTSINTSTNTTINTTTKTSISTTPTTSNTNMDADFNTNMTKIQTSHQKQNLSEFGIVSTSLKSSNNVYNYGEEFKTMEDSNINSVIPSTSGGNITQPWEMPATSNGMEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00307 245 PANTHER OS06G0284500 PROTEIN 36 182 - -
Car01g00307 245 MobiDBLite consensus disorder prediction 106 139 - -
Car01g00307 245 MobiDBLite consensus disorder prediction 90 139 - -
Car01g00307 245 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Car01g00307 245 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 182 IPR045174 GO:0003700|GO:0006355
Car01g00307 245 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Car01g00307 245 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00307 Car-Chr1 2346470 2347885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00307 37 116 C2C2-Dof Transcription Factor Family AT1G51700 58.025 1.07e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car01g00307 zf-Dof 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00307 - - gmx:778119 296.975