Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00471 atggctttgGAAGCTCTGAATTCTCCTACAGCAGCAACCACTCCCTTCACCACCGCCTATGAAGATAATGACGCTGAGGTTGATCTTCACTGCCTTGAGCCATGGGCCAAAAGGAAGCGCTCCAAACGACCTCGTTTCGAGAACCCACCAACAGAGGAGGAGTACCTGGCTCTCTGCCTCATCATGCTTGCCCACAGCGGCAACAAGACTAAGACCACTACCGCCTCGGCGCATCTTAATGAAATTGAGACAGAACCGCAGCCACAGGGACAAGGACAGGCAACGCCGACTGTGAAGCTGTCTCACAGGTGTACAGTTTGTAACAAAGCTTTTTCATCGTATCAAGCACTTGGCGGACACAAAGCCAGCCACCGCAAATCCGCGTCGGAAGCCGTCGCCAACGCCAACACCGATAACGCCTCTGCCTCTGTCTCTGCTTCCACCTCCACAACAACCACCGCCAGTGGTAGGATGCACGAGTGTACTATCTGTCACAAGGCTTTTCCTACTGGGCAAGCCCTTGGCGGTCACAAAAGGTGCCACTATGATGGCGGCAACAGCAAAGACAACGGTAACAACAGCAGCGTTTTGACGTTTTCTGAGGGCGGCGCCTCCACCCACAGCAACCGTGGCTTTGACCTGAACCTTCCGGCACCGTTGACTGACTCCTGGCCGGTGAGCTTTGGCGGCGAGCAAGAGGTGGAAAGCCCTCTACCGGCAGCCGCCAAGAAACCGCGTTTGTTTTTGGGCGAAGAAGACGTAGCTTCGTCAGAAAAGTG 779 0.5443 MALEALNSPTAATTPFTTAYEDNDAEVDLHCLEPWAKRKRSKRPRFENPPTEEEYLALCLIMLAHSGNKTKTTTASAHLNEIETEPQPQGQGQATPTVKLSHRCTVCNKAFSSYQALGGHKASHRKSASEAVANANTDNASASVSASTSTTTTASGRMHECTICHKAFPTGQALGGHKRCHYDGGNSKDNGNNSSVLTFSEGGASTHSNRGFDLNLPAPLTDSWPVSFGGEQEVESPLPAAAKKPRLFLGEEDVASSEK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00471 259 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 249 IPR044653 GO:0003700
Bva14g00471 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Bva14g00471 259 Gene3D Classic Zinc Finger 99 181 - -
Bva14g00471 259 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Bva14g00471 259 SMART c2h2final6 159 181 IPR013087 -
Bva14g00471 259 SMART c2h2final6 102 124 IPR013087 -
Bva14g00471 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 181 IPR013087 -
Bva14g00471 259 MobiDBLite consensus disorder prediction 129 156 - -
Bva14g00471 259 SUPERFAMILY beta-beta-alpha zinc fingers 102 181 IPR036236 -
Bva14g00471 259 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Bva14g00471 259 PANTHER ZINC FINGER PROTEIN ZAT10 1 249 - -
Bva14g00471 259 MobiDBLite consensus disorder prediction 125 156 - -
Bva14g00471 259 Pfam C2H2-type zinc finger 102 126 - -
Bva14g00471 259 Pfam C2H2-type zinc finger 159 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00471 Bva-Chr14 2265342 2266353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00471 1 247 C2H2 Transcription Factor Family AT1G27730 46.850 2.20e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva14g00471 zf-C2H2_6 5e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00471 14 2265342 2266353 Bva14g00471 14 2265342 2266353 ECH
Bva13g00378 13 1760047 1761083 Bva14g00471 14 2265342 2266353 ECH
Bva06g02145 06 14131734 14132929 Bva14g00471 14 2265342 2266353 ECH
Bva10g00653 10 5627324 5628435 Bva14g00471 14 2265342 2266353 ECH