Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00386 ATGCATGGTCAGAGAAGGACTGTTGGGTCCTTCCCAGGAATTGTTAGTATGATGCAAGGTCCTAGTTCTAGTGGCTCTGATATGAATCAGCAGACTTCCTTGAGTCACATGCAAAATGCAGTAGATACACGGTTGCCAGATTATATGGGATCTTCTGGTGAGACTACATGTTTATGTGCCAGTGTCCCTAATGTTCCAAGCTTCAGCAGCTGGAATAATGGTGAGCCAAGTTCTAGATTGAGTCTTCACAACCAAGTCAATGATGATGGATTTAAAACAGAACATGGGCGGTCTTCTTTATGCAGTTCTCAAGCTGAGGGTATTCTCAGGCCAGAAGAAAGGCAGTTTGAAACAAATCATGTAATTTTTCCTGTTAATTCAAATGCTAATTTACAAGGGAATCAATCCACAATTGAGCCCTTCTCTTTGCAAGCTTCCAGCTCCAATCATGTCACCCAGAATGTGATTGTAAACATGGGCCAAGTTGCCAACACTGCTAATCGTGGTAAGGGTACTCaaagtagtagtagtagtagtgtTAATATCCGCAATGCTAATGGGTTAAATAAGGAACAGACATCATTTGGCAGTGCATCATATGATCATGTAGGAACTTCATCTGGAAGCTCTGGTCACCTGGGTGGGGGAGATAATGCAAGTTCAAGTTCTTCTTTAGTAAATTGGGGTTCTTCATGCAAGAGAAAGACCCTTGAAGGTACTTCTGGGCAATTGTGTACAGGAGAAAGCTCAAGCTCTCTTCTTGAAACTGAACATGGTCGCTGGAATACCGGTCTTGCTGATCTTAATGCCTCCAGCAGTTTAACGGTTTTTACCCCTTCAGAGGATATTACCATTACTACTCCTCCAGTACATCAGAACTCAAGAAATGAGGCCAGACAAGTGGCTTCTGATGCATTATCTTTGGTTAGTATTGTGGGAAATGTAGAAAGGCCTCTGAGAAATTCTGATAGGATGATAAACCATGTACAACGTCAGGAGGCTGTACCTTTCAATTCATCATCAACCGGGAGTGCTAGGCATCATAACCATTCTTCTCCTCATCAAATACCTAGCTCTAACGCATTTAATGATTCTTTGGAATTGAGGTTAACAGCCGGAGTAACAGTAGCCAATTCTACTTCTCAAAGCCAGTCACATGTCTTGCAAGTCCCTGGTTTGTCAGGGAACTTGCATCCTTTTCCTTGGAATGGGTCTGCTAATCCAAGGGGCAGCAACTTATCAACTTCTTATAACCATGGGGAAAGATCCATACGAGAAGAATTAAACTTAAGAATCTTCCCAAGAGACAGTACTGAGCACCCCATGCTTGTGCCTGCATCTTCAGGGCATGACCCTACAAGTTGGCAGTTGTCCTCTGGAACTATGACCAATCCTGGAGGTGTACCTCCAACATCTTGGATGGGGTCCAGTTCAAGCATCCATTCTTTGCCTAATCCCAGCTGGATTGTTCCCCATGAAATCCCAACACAGAATCAACAAAGATTATCAGAGTTCAGCCCTTGGtccttttctccttcaattaGCTCTGCATCTGGTGTTCATAATGGTCATTCTGCCTCATCCTCTTCGGGCCCCCCTGCCTTTACTCAGGATTCTAGCAACCATCAACCATATCCAAGATCAGCAGCATTTATGGACAGAAGGGGTAATGATGTTTTCAATGCTCCTCATTCATTGCGAGGTTTAGCTGTGGACATTGAGGGGAGACGTCGACTAATATCTGAGATACGCCAAGTCTTGAATGCAATGCGTAGGGGCGAGAACTTACGAGCTGAGgattatttgctttttgaCCCTTTCATATATCATGGTATGGCTGAAATGCACGACAGGCACAGGGACATGCGACTCGATGTTGATAACATGTCATATGAGGAATTGTTGGCATTGGAGGAGCGCATAGGGGATGTGAGCACTGGATTAAGTGAGGATATCATTATGAAGGTGATGAAACAAAGAATCCATGTGTCTCTGATGACAGATAGCTCTACAGATCTAGAACCCTGCTGTATCTGTCAGGAGGAGTACGCTGATGGGGAGGATATTGCTTCACTGGATTGTGGGCATGAATTCCACACCAACTGCATCAAGCAGTGGCTAACACAGAAGAATCTGTGCCCTATTTGTAAAACAACAGCCTTGGCTACATG 2171 0.4316 MHGQRRTVGSFPGIVSMMQGPSSSGSDMNQQTSLSHMQNAVDTRLPDYMGSSGETTCLCASVPNVPSFSSWNNGEPSSRLSLHNQVNDDGFKTEHGRSSLCSSQAEGILRPEERQFETNHVIFPVNSNANLQGNQSTIEPFSLQASSSNHVTQNVIVNMGQVANTANRGKGTQSSSSSSVNIRNANGLNKEQTSFGSASYDHVGTSSGSSGHLGGGDNASSSSSLVNWGSSCKRKTLEGTSGQLCTGESSSSLLETEHGRWNTGLADLNASSSLTVFTPSEDITITTPPVHQNSRNEARQVASDALSLVSIVGNVERPLRNSDRMINHVQRQEAVPFNSSSTGSARHHNHSSPHQIPSSNAFNDSLELRLTAGVTVANSTSQSQSHVLQVPGLSGNLHPFPWNGSANPRGSNLSTSYNHGERSIREELNLRIFPRDSTEHPMLVPASSGHDPTSWQLSSGTMTNPGGVPPTSWMGSSSSIHSLPNPSWIVPHEIPTQNQQRLSEFSPWSFSPSISSASGVHNGHSASSSSGPPAFTQDSSNHQPYPRSAAFMDRRGNDVFNAPHSLRGLAVDIEGRRRLISEIRQVLNAMRRGENLRAEDYLLFDPFIYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDIIMKVMKQRIHVSLMTDSSTDLEPCCICQEEYADGEDIASLDCGHEFHTNCIKQWLTQKNLCPICKTTALAT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00386 723 MobiDBLite consensus disorder prediction 516 549 - -
Bva14g00386 723 ProSiteProfiles Zinc finger RING-type profile. 676 717 IPR001841 -
Bva14g00386 723 SUPERFAMILY RING/U-box 675 720 - -
Bva14g00386 723 CDD RING-H2_TTC3 675 717 - -
Bva14g00386 723 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 723 - -
Bva14g00386 723 SMART ring_2 676 716 IPR001841 -
Bva14g00386 723 Pfam Ring finger domain 676 717 IPR001841 -
Bva14g00386 723 MobiDBLite consensus disorder prediction 191 220 - -
Bva14g00386 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 721 IPR013083 -
Bva14g00386 723 MobiDBLite consensus disorder prediction 516 546 - -
Bva14g00386 723 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 723 IPR045191 GO:0061630
Bva14g00386 723 MobiDBLite consensus disorder prediction 337 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00386 Bva-Chr14 1920363 1925687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g00386 18 723 C3H Transcription Factor Family AT2G15530 37.500 2.94e-127 392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00386 14 1920363 1925687 Bva14g00386 14 1920363 1925687 ECH
Bva13g00308 13 1453197 1458374 Bva14g00386 14 1920363 1925687 ECH
Bva06g02103 06 13933045 13937932 Bva14g00386 14 1920363 1925687 ECH
Bva10g00704 10 5848824 5854137 Bva14g00386 14 1920363 1925687 ECH