Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02196 ATGGAGAAAGGGTGGAAGCCTGATGTTGATACATCGACAAATTGTCCAAGGTGTGGTTCTTCCAGCACCAAATTTTGCTACTATAACAACTACAGCTTAACACAACCACGCTATTTTTGCAAAGCCTGCAGAAGGTACTGGACTAAAGGAGGTTCTCTCCGCAATGTGCCTGTGGGTGGGGGATGCCGCAAAAATAGACGGGCAAATAGGATCGCCAGGCAAGCCACGGATGCTACTCCCTCCAGAAATTCACCTCATGGAGGTGCTACTAATAACCCAATTGGCCATTCTTATGATCCATCAAAGAATCCATGTTCTAGCTCCTCAGTGGTGTCTGATGCTCCAAATATTGATCTTGCAGTAGTTTATGCAAATTTTCTCAATCAAAAACCGGATTCAAGAGCAGGGCTTGAGAACCCAGAAATACAAACTGTTTTTGATCCCTCTGTTGAGTATATTTCAAGCTTACCAAACACACAGGTTAGCCCAAGTTTATCTTTACCAGAAGAACATGGTTTTAGTGGGTGCTTAAATATGTCCCAACAATCCATAGAGTCCCATTTCAATGAGGGTAATCAATTGTACAATTGTGAGATCAACTCTATGCAGAAGCATCAAGAAGATAGAATAGAGAAATATTATACTAGTCATGATACTGTCAATTTTGAGTTGCCACTATTGCCAGGTGAAGAGGCAGGTTCTCGTGATATGATGTGGTCCAATTCTGAGATGATGGTAAACAATGACTTGCAAGCTACGCAACCACCAGCTTTTGGACCCGAAATTCATGATCCGGAGTTGTTGATGGATAATTGGAGCCCTTTCGATTTGGCAATTAGGGATGCTTCCTTTTTCAGACCTtg 863 0.4229 MEKGWKPDVDTSTNCPRCGSSSTKFCYYNNYSLTQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRANRIARQATDATPSRNSPHGGATNNPIGHSYDPSKNPCSSSSVVSDAPNIDLAVVYANFLNQKPDSRAGLENPEIQTVFDPSVEYISSLPNTQVSPSLSLPEEHGFSGCLNMSQQSIESHFNEGNQLYNCEINSMQKHQEDRIEKYYTSHDTVNFELPLLPGEEAGSRDMMWSNSEMMVNNDLQATQPPAFGPEIHDPELLMDNWSPFDLAIRDASFFRP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02196 287 MobiDBLite consensus disorder prediction 72 109 - -
Bva13g02196 287 MobiDBLite consensus disorder prediction 60 109 - -
Bva13g02196 287 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Bva13g02196 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 281 IPR045174 GO:0003700|GO:0006355
Bva13g02196 287 Pfam Dof domain, zinc finger 11 67 IPR003851 GO:0003677|GO:0006355
Bva13g02196 287 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Bva13g02196 287 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02196 Bva-Chr13 17074771 17075634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02196 5 278 C2C2-Dof Transcription Factor Family AT3G52440 38.832 1.26e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bva13g02196 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02196 - - gmx:100787193 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02196 13 17074771 17075634 Bva13g02196 13 17074771 17075634 ECH