Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01299 ATGAGAAAACCTTGCTGTGACAAAGAAGGCACCAACAAGGGTGCTTGGTCCAAGCAAGAAGATCAAAAGCTCATTGATTACATTCGAACTCATGGTGAAGGATGCTGGCGTTCCCTTCCCAAGGCTGCAGGGTTGCATAGGTGTGGCAAAAGTTGTAGGCTGAGATGGATAAACTATCTAAGACCAGACATTAAACGTGGAAACTTTGCCCAAGATGAGGAAGATCTCATCATCAAACTTCATGCCCTTCTTGGCAACAGGTGGTCACTAATAGCTGGAAGGTTGCCTGGCCGTACAGATAATGAGGTGAAAAACTATTGGAACTCTCACATCCGCAGAAAGCTCATAAAGGTGGGTATTGATCCAAATAACCATAAGATACACCAAAGCTTTCCTCGTCTTCATCATGTTTCTCCAGGTGCATCATCGTCTGCTTCCATGAAGAACAAAGAGCATAAACCCTTGAAATATGCCAAAGATAGAATTTCTGCTGACACTGATCAAAGTGGTCTAGAAGAAGACACAATGAACTCTTCCCAATTGAACCTAGATCTCACCATTGCTTTCCCTTCTCCCGTCGTGGAAGAAAAATCGAAATCAAATTCAGAATCCACCAAGATAAGAGATCATATGGATAGTGAATCAGCTCCAATCCTCGTTCTGTTTAGATA 671 0.4277 MRKPCCDKEGTNKGAWSKQEDQKLIDYIRTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKVGIDPNNHKIHQSFPRLHHVSPGASSSASMKNKEHKPLKYAKDRISADTDQSGLEEDTMNSSQLNLDLTIAFPSPVVEEKSKSNSESTKIRDHMDSESAPILVLFR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01299 223 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Bva13g01299 223 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Bva13g01299 223 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Bva13g01299 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Bva13g01299 223 Gene3D - 68 159 - -
Bva13g01299 223 CDD SANT 68 111 IPR001005 -
Bva13g01299 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Bva13g01299 223 Gene3D - 13 65 - -
Bva13g01299 223 CDD SANT 15 60 IPR001005 -
Bva13g01299 223 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Bva13g01299 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 223 - -
Bva13g01299 223 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Bva13g01299 223 MobiDBLite consensus disorder prediction 134 153 - -
Bva13g01299 223 SMART sant 65 113 IPR001005 -
Bva13g01299 223 SMART sant 12 62 IPR001005 -
Bva13g01299 223 PANTHER MYB TRANSCRIPTION FACTOR 2 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01299 Bva-Chr13 6653530 6655003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01299 2 191 MYB Transcription Factor Family AT4G09460 57.073 1.24e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g01299 Myb_DNA-binding 2.6e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01299 13 6653530 6655003 Bva04g00866 04 5677608 5678842 ECH
Bva13g01299 13 6653530 6655003 Bva13g01299 13 6653530 6655003 ECH
Bva01g01612 01 17428476 17430253 Bva13g01299 13 6653530 6655003 ECH
Bva11g00648 11 9768340 9770302 Bva13g01299 13 6653530 6655003 ECH